Difference between revisions of "June 2006 GMOD Meeting"
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+ | GMOD Generic Model Organism Database | ||
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− | + | ==Meeting 8== | |
− | + | June 29-30 [http://nescent.org NESCent], Durham, NC | |
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− | + | ==Agenda== | |
− | 9:30 Project updates - GBrowse, Apollo, PubSearch | + | <p><b>June 29</b></p> |
+ | <p>8:30 Shuttle from hotel to NESCent</p> | ||
+ | <p>9:00 Introductions - Scott Cain</p> | ||
+ | <p>9:20 About NESCent - Todd Vision, Kathleen Smith</p> | ||
+ | <p>9:30 Project updates - GBrowse, Apollo, PubSearch SGD-gmod.pp SGD etc</p> | ||
+ | <p>10:45 Coffee break</p> | ||
+ | <p>11:00 Whats_new.ppt GMOD Update, including:</p> | ||
+ | <ul> | ||
+ | <li>0.01 release | ||
+ | <li>Changes to GFF3 data mapping | ||
+ | <li>New schema elements | ||
+ | <li>State of integration: Apollo, GBrowse, CMap, BioMart,AmiGO | ||
+ | </ul> | ||
+ | <p>12:00 Lunch</p> | ||
+ | <p>1:15 SynBrowse--What's new and obtaining/creating data for use.<br/> | ||
+ | Xiaokang Pan, Iowa State University</p> | ||
+ | <p>1:45 gmodj06-genomegrid-dgg.pdf GMODTools, gff2biomart, and genome grid tools<br/> | ||
+ | Don Gilbert, Indiana University</p> | ||
+ | <p>2:15 BioMart<br /> | ||
+ | Arek Kasprzyk, EBI</p> | ||
+ | <p>2:45 Coffee</p> | ||
+ | <p>3:00 biocyc-GMOD-2006.ppt Pathway Tools<br /> | ||
+ | Suzanne Mercer Paley, SRI</p> | ||
+ | <p>3:30 GMOD Architecture Working Group - | ||
+ | GMOD_Architecture.ppt Finding requirements for a 'toy' application for testing middleware<br/> | ||
+ | Scott Cain as a proxy for Eric Just, DictyBase</p> | ||
+ | <p>4:30 GMOD organizational stuff</p> | ||
+ | <ul> | ||
+ | <li>Future meetings? | ||
+ | <li>Coordinated publications? | ||
+ | </ul> | ||
+ | <p>5:00 Break for dinner</p> | ||
+ | <p><b>June 30</b></p> | ||
+ | <p>8:30 Shuttle from hotel to NESCent</p> | ||
+ | <p>9:00 Todd Vision - vision.pdf NESCent, its role in enabling evolutionary model organism databases, and population and phylogenetic visualization</p> | ||
+ | <p>9:15 Terry Casstevens - GDPDM_GMOD_presentation20060630.ppt The Genomic Diversity and Phenotype Data Model</p> | ||
+ | <p>9:40 John Willis - willis.pdf Mimulus as an example of an evolutionary model system</p> | ||
+ | <p>9:55 Owen McMillan - mcmillan.pdf Extension of Chado for Heliconius</p> | ||
+ | <p>10:10 David Kidd - kidd.pdf Visualizing phylogeographic patterns</p> | ||
+ | <p>10:30 Coffee</p> | ||
+ | <p>10:45 Jason Stajich - Stajich_GMOD_2006-06-30.pdf Fungal comparative genomics</p> | ||
+ | <p>11:10 Hilmar Lapp - lapp.pdf An evolutionary ontology proposal</p> | ||
+ | <p>11:35 Discussion of planned projects and grant applications and how to avoid duplication and encourage cooperation</p> | ||
+ | <p>12:00 Lunch</p> | ||
+ | <p>1:15 (Presentations, show and tell, depends on what suggestions we get).</p> | ||
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[[Category:Meetings]] | [[Category:Meetings]] |
Revision as of 17:16, 6 April 2007
GMOD Generic Model Organism Database
Meeting 8
June 29-30 NESCent, Durham, NC
Agenda
June 29
8:30 Shuttle from hotel to NESCent
9:00 Introductions - Scott Cain
9:20 About NESCent - Todd Vision, Kathleen Smith
9:30 Project updates - GBrowse, Apollo, PubSearch SGD-gmod.pp SGD etc
10:45 Coffee break
11:00 Whats_new.ppt GMOD Update, including:
- 0.01 release
- Changes to GFF3 data mapping
- New schema elements
- State of integration: Apollo, GBrowse, CMap, BioMart,AmiGO
12:00 Lunch
1:15 SynBrowse--What's new and obtaining/creating data for use.
Xiaokang Pan, Iowa State University
1:45 gmodj06-genomegrid-dgg.pdf GMODTools, gff2biomart, and genome grid tools
Don Gilbert, Indiana University
2:15 BioMart
Arek Kasprzyk, EBI
2:45 Coffee
3:00 biocyc-GMOD-2006.ppt Pathway Tools
Suzanne Mercer Paley, SRI
3:30 GMOD Architecture Working Group -
GMOD_Architecture.ppt Finding requirements for a 'toy' application for testing middleware
Scott Cain as a proxy for Eric Just, DictyBase
4:30 GMOD organizational stuff
- Future meetings?
- Coordinated publications?
5:00 Break for dinner
June 30
8:30 Shuttle from hotel to NESCent
9:00 Todd Vision - vision.pdf NESCent, its role in enabling evolutionary model organism databases, and population and phylogenetic visualization
9:15 Terry Casstevens - GDPDM_GMOD_presentation20060630.ppt The Genomic Diversity and Phenotype Data Model
9:40 John Willis - willis.pdf Mimulus as an example of an evolutionary model system
9:55 Owen McMillan - mcmillan.pdf Extension of Chado for Heliconius
10:10 David Kidd - kidd.pdf Visualizing phylogeographic patterns
10:30 Coffee
10:45 Jason Stajich - Stajich_GMOD_2006-06-30.pdf Fungal comparative genomics
11:10 Hilmar Lapp - lapp.pdf An evolutionary ontology proposal
11:35 Discussion of planned projects and grant applications and how to avoid duplication and encourage cooperation
12:00 Lunch
1:15 (Presentations, show and tell, depends on what suggestions we get).