Difference between revisions of "June 2006 GMOD Meeting"

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GMOD Generic Model Organism Database
  
Last updated July 17, 2006.
 
  
'''June 29'''
+
==Meeting 8==
  
8:30 Shuttle from hotel to NESCent
+
June 29-30 [http://nescent.org NESCent], Durham, NC
  
9:00 Introductions - Scott Cain
 
  
9:20 About NESCent - Todd Vision, Kathleen Smith
+
==Agenda==
  
9:30 Project updates - GBrowse, Apollo, PubSearch, [[SGD]] etc
+
<p><b>June 29</b></p>
 +
<p>8:30 Shuttle from hotel to NESCent</p>
 +
<p>9:00 Introductions - Scott Cain</p>
 +
<p>9:20 About NESCent - Todd Vision, Kathleen Smith</p>
 +
<p>9:30 Project updates - GBrowse, Apollo, PubSearch SGD-gmod.pp SGD etc</p>
 +
<p>10:45 Coffee break</p>
 +
<p>11:00 Whats_new.ppt GMOD Update, including:</p>
 +
<ul>
 +
<li>0.01 release
 +
<li>Changes to GFF3 data mapping
 +
<li>New schema elements
 +
<li>State of integration: Apollo, GBrowse, CMap, BioMart,AmiGO
 +
</ul>
 +
<p>12:00 Lunch</p>
 +
<p>1:15 SynBrowse--What's new and obtaining/creating data for use.<br/>
 +
Xiaokang Pan, Iowa State University</p>
 +
<p>1:45 gmodj06-genomegrid-dgg.pdf GMODTools, gff2biomart, and genome grid tools<br/>
 +
Don Gilbert, Indiana University</p>
 +
<p>2:15 BioMart<br />
 +
Arek Kasprzyk, EBI</p>
 +
<p>2:45 Coffee</p>
 +
<p>3:00 biocyc-GMOD-2006.ppt Pathway Tools<br />
 +
Suzanne Mercer Paley, SRI</p>
 +
<p>3:30 GMOD Architecture Working Group -
 +
GMOD_Architecture.ppt Finding requirements for a 'toy' application for testing middleware<br/>
 +
Scott Cain as a proxy for Eric Just, DictyBase</p>
 +
<p>4:30 GMOD organizational stuff</p>
 +
<ul>
 +
<li>Future meetings?
 +
<li>Coordinated publications?
 +
</ul>
 +
<p>5:00 Break for dinner</p>
 +
<p><b>June 30</b></p>
 +
<p>8:30 Shuttle from hotel to NESCent</p>
 +
<p>9:00 Todd Vision - vision.pdf NESCent, its role in enabling evolutionary model organism databases, and population and phylogenetic visualization</p>
 +
<p>9:15 Terry Casstevens - GDPDM_GMOD_presentation20060630.ppt The Genomic  Diversity and Phenotype Data Model</p>
 +
<p>9:40 John Willis - willis.pdf Mimulus as an example of an evolutionary model system</p>
 +
<p>9:55 Owen McMillan - mcmillan.pdf Extension of Chado for Heliconius</p>
 +
<p>10:10 David Kidd - kidd.pdf Visualizing phylogeographic patterns</p>
 +
<p>10:30 Coffee</p>
 +
<p>10:45 Jason Stajich - Stajich_GMOD_2006-06-30.pdf Fungal comparative genomics</p>
 +
<p>11:10 Hilmar Lapp - lapp.pdf An evolutionary ontology proposal</p>
 +
<p>11:35 Discussion of planned projects and grant applications and how to avoid duplication and encourage cooperation</p>
 +
<p>12:00 Lunch</p>
 +
<p>1:15  (Presentations, show and tell, depends on what suggestions we get).</p>
  
10:45 Coffee break
 
 
11:00 [[GMOD Update]], including:
 
 
* 0.01 release
 
* Changes to GFF3 data mapping
 
* New schema elements
 
* State of integration: Apollo, GBrowse, CMap, BioMart,AmiGO
 
 
12:00 Lunch
 
 
1:15 SynBrowse--What's new and obtaining/creating data for use.<br /> Xiaokang Pan, Iowa State University
 
 
1:45 [http://eugenes.org/gmod/meetings/gmod-06jun/gmodj06-genomegrid-dgg.pdf GMODTools, gff2biomart, and genome grid tools]<br /> Don Gilbert, Indiana University
 
 
2:15 BioMart<br /> Arek Kasprzyk, EBI
 
 
2:45 Coffee
 
 
3:00 [[Pathway Tools]]<br /> Suzanne Mercer Paley, SRI
 
 
3:30 GMOD Architecture Working Group - [[Finding requirements for a 'toy' application for testing middleware]]<br /> Scott Cain as a proxy for Eric Just, DictyBase
 
 
4:30 GMOD organizational stuff
 
 
* Future meetings?
 
* Coordinated publications?
 
 
5:00 Break for dinner
 
 
'''June 30'''
 
 
8:30 Shuttle from hotel to NESCent
 
 
9:00 Todd Vision - [[NESCent, its role in enabling evolutionary model organism databases, and population and phylogenetic visualization]]
 
 
9:15 Terry Casstevens - [[The Genomic Diversity and Phenotype Data Model]]
 
 
9:40 John Willis - [[Mimulus as an example of an evolutionary model system]]
 
 
9:55 Owen McMillan - [[Extension of Chado for Heliconius]]
 
 
10:10 David Kidd - [[Visualizing phylogeographic patterns]]
 
 
10:30 Coffee
 
 
10:45 Jason Stajich - [[Fungal comparative genomics]]
 
 
11:10 Hilmar Lapp - [[An evolutionary ontology proposal]]
 
 
11:35 Discussion of planned projects and grant applications and how to avoid duplication and encourage cooperation
 
 
12:00 Lunch
 
 
1:15 (Presentations, show and tell, depends on what suggestions I get).
 
 
The meeting will probably officially break around 5pm, but I am realistic enough to know that people will start leaving after lunch.
 
 
 
 
 
GMODTools, gff2biomart, and genome grid tools slide show is here<br />http://eugenes.org/gmod/meetings/gmod-06jun/gmodj06-genomegrid-dgg.pdf,<br />[http://eugenes.org/gmod/meetings/gmod-06jun/gmodj06-genomegrid-dgg.ppt and PPT]
 
  
  
 
[[Category:Meetings]]
 
[[Category:Meetings]]

Revision as of 17:16, 6 April 2007

GMOD Generic Model Organism Database


Meeting 8

June 29-30 NESCent, Durham, NC


Agenda

June 29

8:30 Shuttle from hotel to NESCent

9:00 Introductions - Scott Cain

9:20 About NESCent - Todd Vision, Kathleen Smith

9:30 Project updates - GBrowse, Apollo, PubSearch SGD-gmod.pp SGD etc

10:45 Coffee break

11:00 Whats_new.ppt GMOD Update, including:

  • 0.01 release
  • Changes to GFF3 data mapping
  • New schema elements
  • State of integration: Apollo, GBrowse, CMap, BioMart,AmiGO

12:00 Lunch

1:15 SynBrowse--What's new and obtaining/creating data for use.
Xiaokang Pan, Iowa State University

1:45 gmodj06-genomegrid-dgg.pdf GMODTools, gff2biomart, and genome grid tools
Don Gilbert, Indiana University

2:15 BioMart
Arek Kasprzyk, EBI

2:45 Coffee

3:00 biocyc-GMOD-2006.ppt Pathway Tools
Suzanne Mercer Paley, SRI

3:30 GMOD Architecture Working Group - GMOD_Architecture.ppt Finding requirements for a 'toy' application for testing middleware
Scott Cain as a proxy for Eric Just, DictyBase

4:30 GMOD organizational stuff

  • Future meetings?
  • Coordinated publications?

5:00 Break for dinner

June 30

8:30 Shuttle from hotel to NESCent

9:00 Todd Vision - vision.pdf NESCent, its role in enabling evolutionary model organism databases, and population and phylogenetic visualization

9:15 Terry Casstevens - GDPDM_GMOD_presentation20060630.ppt The Genomic Diversity and Phenotype Data Model

9:40 John Willis - willis.pdf Mimulus as an example of an evolutionary model system

9:55 Owen McMillan - mcmillan.pdf Extension of Chado for Heliconius

10:10 David Kidd - kidd.pdf Visualizing phylogeographic patterns

10:30 Coffee

10:45 Jason Stajich - Stajich_GMOD_2006-06-30.pdf Fungal comparative genomics

11:10 Hilmar Lapp - lapp.pdf An evolutionary ontology proposal

11:35 Discussion of planned projects and grant applications and how to avoid duplication and encourage cooperation

12:00 Lunch

1:15 (Presentations, show and tell, depends on what suggestions we get).