January 2007 GMOD Meeting

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GMOD Generic Model Organism Database

Meeting 9

January 18-19, San Diego CA.

The January 2007 GMOD meeting was held at the Town and Country Hotel in San Diego. The meeting was divided into two parts: a MOD user interface caucus and a Chado Middleware Bake Off.

MOD User Interface Caucus

Report from the UI Caucus: MOD Interface Summary

GMOD Middleware

Reports from the Middleware Meeting: GMOD Middleware


Agenda

  • 9:00 AM - 9:05 AM Introduction, Eric Just
  • 9:05 AM - 9:30 AM Object/relational Mapping Principles, Sohel Merchant
  • 9:30 AM - 9:55 AM XORT, Pinglei Zhou
  • 9:55 AM - 10:20 AM Chado::AutoDBI, Brian O'Connor
  • 10:20 AM - 10:35 AM Coffee Break
  • 10:35 AM - 11:00 AM Modware, Eric Just
  • 11:00 AM - 11:20 AM GBrowse (DasI) Adaptor, Scott Cain
  • 11:20 AM - 11:45 AM iBatis, Jeff Bowes
  • 11:45 AM - 1:15 PM LUNCH
  • 1:15 PM - 1:40 PM Hibernate, Robert Bruggner
  • 1:40 PM - 2:05 PM PSU Chado Interface, Chinmay Patel
  • 2:05 PM - 2:20 PM Coffee Break
  • 2:20 PM - 2:45 PM GUS Web Development Kit (not GUS-specific), Steve Fischer
  • 2:45 PM - 3:10 PM InterMine/FlyMine data warehousing, Gos Micklem
  • 3:10 PM - 4:30 PM Wrap up (Eric Just, Scott Cain, Brian Osborne), discussion

Attendees

The meeting was well attended, with about 60 people from a large variety of organizations:

Peter KarpEcoCyc
Richard BruskiewichIRRI/IRIS + Generation Challenge Programme
Kate RosenbloomUCSC Genome Bioinformatics Group
Zhiliang HuIowa State University
Robert WilsonFlyBase
Sohel MerchantDictyBase
Chinmay PatelGeneDB
pinglei zhouFlyBase
Prachi ShahCandida Genome Database
Vivien BonazziNHGRI
Jay SundaramTIGR
Peter KarpEcoCyc
Ben FagaGMOD
George KowalskiRGD
Dave MatthewsGrainGenes
Brian OsborneNESCent
Eric JustDictyBase
Susan BrombergRGD
Eva HualaTAIR
AllenGMOD
Sheldon McKayWormBase
Todd HarrisWormBase
Kim PruittNCBI
Karla GendlerChromDB (www.chromdb.org)
Donghui LiTAIR
Gos MicklemFlyMine/InterMine
Ning WeiTAMU
Brian OsborneNESCent
Sofia RobbPlanariaDB
steve fischerGUS/PlasmoDB
Brian O'ConnorUCLA
Arek KasprzykEBI
Robert BruggnerVectorBase
Susan BridgesAgBase
Lincoln SteinWormBase
Madeline A. CrosbyFlyBase
Robert BuelsSGN
Dianna FiskSGD
Sohel MerchantDictyBase
Bob MullerTAIR
Suzanne PaleyEcoCyc
Hanni SalihBovineGenome.org
Peili ZhangFlyBase
Eric RossPlanariaDB
Manuel J TorresPlant Genome Mapping Lab, UGA
James ReecyAnimalgenome.org
Eileen KraemerApiDB
Brian O'ConnorUCLA
Jim HuEcoliHub/EcoliWiki
Justin ReeseBeeBase, Bovine Genome Database
Victor StreletsFlyBase
Josh GoodmanFlyBase
Christine ElsikBeeBase, Bovine Genome Database
Anand VenkatramanBeeBase
Haiyan ZhangFlyBase
Don GilbertwFleaBase, DroSpeGe
David Adelsonbovinegenome.org
Ceri Van SlykeZFIN
Joshua OrvisTIGR
Kathleen FallsFlyBase
Jeff BowesXenBase
Susan BelloMGI
Joel RichardsonMGI
Scott CainGMOD