Difference between revisions of "JBrowseDev/Current"
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* [[JBrowseDev/General Usage|General Usage]], including information about: | * [[JBrowseDev/General Usage|General Usage]], including information about: | ||
** [[JBrowseDev/General Usage#User Interface|The JBrowse user interface]] | ** [[JBrowseDev/General Usage#User Interface|The JBrowse user interface]] | ||
| − | ** [[JBrowseDev/General Usage#Reference Sequences|Creating sequence tracks]] (e.g. from FASTA files) | + | ** [[JBrowseDev/General Usage#Reference Sequences|Creating sequence tracks]] (e.g. from FASTA files, or a Chado database) |
| − | ** [[JBrowseDev/General Usage#Feature Tracks|Creating feature tracks]] (e.g. from BED or GFF files) | + | ** [[JBrowseDev/General Usage#Feature Tracks|Creating feature tracks]] (e.g. from BED or GFF files, a Chado database, or the UCSC genome browser) |
** [[JBrowseDev/General Usage#Image Tracks|Creating image tracks]] (e.g. from WIG files) | ** [[JBrowseDev/General Usage#Image Tracks|Creating image tracks]] (e.g. from WIG files) | ||
** [[JBrowseDev/General Usage#Searchable Names|Making features searchable by name]] | ** [[JBrowseDev/General Usage#Searchable Names|Making features searchable by name]] | ||
Revision as of 20:00, 3 August 2011
This page contains links to documentation pages for the current version of JBrowse (1.2.1).
Contents
Installation
Usage Notes
- General Usage, including information about:
- The JBrowse user interface
- Creating sequence tracks (e.g. from FASTA files, or a Chado database)
- Creating feature tracks (e.g. from BED or GFF files, a Chado database, or the UCSC genome browser)
- Creating image tracks (e.g. from WIG files)
- Making features searchable by name
- Removing tracks
- Additional topics:
