Difference between revisions of "JBrowse"

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* [[:Image:GBrowse3GMOD2008.pdf]] - Presentation by Ian Holmes at [[July 2008 GMOD Meeting]].  See the [[July 2008 GMOD Meeting#GBrowse 3.0|talk's summary for more]].
 
* [[:Image:GBrowse3GMOD2008.pdf]] - Presentation by Ian Holmes at [[July 2008 GMOD Meeting]].  See the [[July 2008 GMOD Meeting#GBrowse 3.0|talk's summary for more]].
 
* [[:Image:Jan2009JBrowse.pdf|JBrowse]] - Presentation by Mitch Skinner at the [[January 2009 GMOD Meeting]].  See the [[January 2009 GMOD Meeting#JBrowse|talk's summary for more]].
 
* [[:Image:Jan2009JBrowse.pdf|JBrowse]] - Presentation by Mitch Skinner at the [[January 2009 GMOD Meeting]].  See the [[January 2009 GMOD Meeting#JBrowse|talk's summary for more]].
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* [[Media:Aug2009JBrowse.pdf|PDF]] - Presentation by Ian Holmes at the [[August 2009 GMOD Meeting]].
  
 
== Downloads ==
 
== Downloads ==

Revision as of 10:49, 7 August 2009

JBrowse is a genome browser with an AJAX-based interface. JBrowse renders most tracks using client side JavaScript and JSON as its data transfer format. JBrowse is currently under development by the Ian Holmes Lab at UC Berkeley. It is expected to have a production release in 2009. Most development has been done by Mitch Skinner. JBrowse was formerly known as GBrowse 3. However, this name was changed to JBrowse to avoid confusion: JBrowse is an alternative to GBrowse, not a successor.

Demo

D. melanogaster

Requirements

  • From CPAN:
    • BioPerl 1.6
    • JSON
    • JSON::XS (optional, for speed)
  • libpng

Documentation

Presentations

Downloads

From GitHub.

Screenshots

JBrowseShot2.png

Demo screenshot from 2009/03/24, showing region of Drosophila melanogaster 2R.

Mailing List

Contact