Information for "JBrowse"

Jump to: navigation, search

Basic information

Display titleJBrowse
Default sort keyJBrowse
Page length (in bytes)8,420
Page ID1157
Page content languageEnglish (en)
Page content modelwikitext
Indexing by robotsAllowed
Number of views377,873
Number of redirects to this page3
Counted as a content pageYes

Page protection

EditAllow all users
MoveAllow all users

Edit history

Page creatorClements (Talk | contribs)
Date of page creation00:26, 21 February 2009
Latest editorColin Diesh (Talk | contribs)
Date of latest edit19:18, 15 April 2016
Total number of edits138
Total number of distinct authors9
Recent number of edits (within past 91 days)0
Recent number of distinct authors0

Page properties

Transcluded templates (5)

Templates used on this page:

Retrieved from "http://gmod.org/wiki/JBrowse"
Facts about "JBrowse"RDF feed
Available on platformweb +
Has URLhttp://jbrowse.org/install/ +, http://jbrowse.org +, http://twitter.com/usejbrowse +, http://github.com/GMOD/jbrowse +, http://jbrowse.org/demos +, http://icemangenome.net/%E2%80%8E +, http://genomesunzipped.org/jbrowse +, http://beetlebase.org + and http://www.medicinalgenomics.com/the-jane-ome/ +
Has descriptionBrowse the genome of Ötzi the ice man + and JBrowse is a genome browser with a fully dJBrowse is a genome browser with a fully dynamic AJAX interface, being developed as the eventual successor to GBrowse. It is very fast and scales well to large datasets. JBrowse is javascript-based and does almost all of its work directly in the user's web browser, with minimal requirements for the server.

Features[edit]

  • Fast, smooth scrolling and zooming. Explore your genome with unparalleled speed.
  • Scales easily to multi-gigabase genomes and deep-coverage sequencing.
  • Supports GFF3, BED, FASTA, Wiggle, BigWig, BAM, VCF (with tabix), REST, and more. BAM, BigWig, and VCF data are displayed directly from the compressed binary file with no conversion needed.
  • Very light server resource requirements. In fact, JBrowse has no back-end server code, just tools for formatting data files to be read directly over HTTP. Serve huge datasets from a single low-cost cloud instance.ets from a single low-cost cloud instance. +
Has development statusactive +
Has input formatGFF3 +, BED +, FASTA +, WIG +, BedGraph +, Bio::DB::* +, UCSC +, Wiggle +, BigWig + and BAM +
Has licenceLGPL + and Artistic License 2.0 +
Has logoJBrowseLogo.png +
Has software maturity statusmature +
Has support statusactive +
Has titleJBrowse demos +, Ice Man Genome +, Genomes Unzipped: Public Personal Genomics +, BeetleBase + and The Jane-Ome, medicinal marijuana project +
Has topicJBrowse +
Is open sourceYes +
Link typedownload +, social media +, website +, source code +, demo server + and wild URL +
Release date2008 +
Tool functionality or classificationGenome visualization +
Written in languageJavascript + and Perl +
Has subobjectThis property is a special property in this wiki.JBrowse#http://jbrowse.org/install/ +, JBrowse#http://jbrowse.org +, JBrowse#http://twitter.com/usejbrowse +, JBrowse#http://github.com/GMOD/jbrowse +, JBrowse#http://jbrowse.org/demos +, JBrowse#http://icemangenome.net/‎ +, JBrowse#http://genomesunzipped.org/jbrowse +, JBrowse#http://beetlebase.org + and JBrowse#http://www.medicinalgenomics.com/the-jane-ome/ +