Difference between revisions of "ISMB 2010"
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− | { | + | {| |
− | + | | <div class="emphasisbox">GMOD will also have a strong presence at [[ISMB/ECCB 2011]].</div> | |
− | [http://www.iscb.org/ismb2010 ISMB] | + | | [http://www.iscb.org/ismb2010 ISMB 2010] was held July 9-13 in Boston. As in past years, there was once again significant GMOD content at ISMB, including |
* talks on [[Galaxy]], [[GBrowse]], [[JBrowse]], [[Pathway Tools]], ... | * talks on [[Galaxy]], [[GBrowse]], [[JBrowse]], [[Pathway Tools]], ... | ||
* a tutorial on [[Galaxy]], | * a tutorial on [[Galaxy]], | ||
* many posters, and | * many posters, and | ||
* several Special Interest Group (SIG) meetings relevant to GMOD members. | * several Special Interest Group (SIG) meetings relevant to GMOD members. | ||
+ | | [[File:ISMB2010 logo.jpg|link=http://www.iscb.org/ismb2010|ISMB 2010 Conference]] | ||
+ | |} | ||
+ | |||
== Events, Talks, and Posters == | == Events, Talks, and Posters == | ||
Line 15: | Line 18: | ||
! Title & Presenter/Organizer | ! Title & Presenter/Organizer | ||
! Components | ! Components | ||
+ | ! Slides / Poster | ||
|- | |- | ||
− | ! rowspan=" | + | ! rowspan="4" | Friday & Saturday July 9-10 |
− | | rowspan=" | + | | rowspan="4" align="center" | 8:30-6:30 |
− | | rowspan=" | + | | rowspan="4" | [http://www.iscb.org/ismb2010-program/satellite-meetings Satellites & SIGs] |
− | | [http://www. | + | | [http://www.open-bio.org/wiki/BOSC_2010 Bioinformatics Open Source Conference (BOSC)], Kam Dahlquist |
− | | [ | + | | See below for specific talks |
+ | | [http://www.slideshare.net/bosc2010/presentations SlideShare] | ||
|- | |- | ||
| [http://www.iscb.org/ismb2010-program/satellite-meetings#BioOntologies Bio-Ontologies], Nigam Shah, ''et al.'' | | [http://www.iscb.org/ismb2010-program/satellite-meetings#BioOntologies Bio-Ontologies], Nigam Shah, ''et al.'' | ||
+ | | | ||
| | | | ||
|- | |- | ||
| [http://www.iscb.org/ismb2010-program/satellite-meetings#HiTSeq HITSeq: High throughput Sequencing], Inanc Birol, ''et al.'' | | [http://www.iscb.org/ismb2010-program/satellite-meetings#HiTSeq HITSeq: High throughput Sequencing], Inanc Birol, ''et al.'' | ||
+ | | | ||
| | | | ||
|- | |- | ||
− | ! rowspan=" | + | | [http://gensc.org/gc_wiki/images/8/87/BioSharing-SIG-Handout.pdf Metagenomics, Metadata, Meta-analysis (M3) & BioSharing], Ed DeLong, ''et al.'' |
+ | | | ||
+ | | | ||
+ | |- | ||
+ | ! colspan="6" | | ||
+ | |- | ||
+ | ! rowspan="2" | Friday July 9 | ||
+ | | align="center" | 12:15-12:30 | ||
+ | | rowspan="2" | [http://www.iscb.org/ismb2010-program/satellite-meetings#BOSC BOSC] | ||
+ | | [http://www.slideshare.net/bosc2010/afgan-bosc2010-galaxycloud Deploying Galaxy on the Cloud], Enis Afgan, | ||
+ | | [[Galaxy]] | ||
+ | | [[Media:DeployingGalaxyCloudBOSC2010.pdf|PDF]] | ||
+ | |- | ||
+ | | align="center" | 3:30-3:38 | ||
+ | | [http://www.slideshare.net/bosc2010/hemmerich-bosc2010-isgaergatis Automated Annotation of NGS Transcriptome Data using ISGA and Ergatis], [[User:Chemmeri|Chris Hemmerich]] | ||
+ | | [[Ergatis]] | ||
+ | | [[Media:NGSTranscriptomeISGAErgatis.pdf|PDF]] | ||
+ | |- | ||
+ | ! colspan="6" | | ||
+ | |- | ||
+ | ! rowspan="2" | Saturday July 10 | ||
| align="center" | 1:30-5:30 | | align="center" | 1:30-5:30 | ||
| [http://www.iscb.org/ismb2010-program/ismb2010-tutorials Tutorials] | | [http://www.iscb.org/ismb2010-program/ismb2010-tutorials Tutorials] | ||
| [http://www.iscb.org/ismb2010-program/ismb2010-tutorials#PM4 PM 4: Galaxy: Analyze, Visualize, Communicate], The [[Galaxy]] Team | | [http://www.iscb.org/ismb2010-program/ismb2010-tutorials#PM4 PM 4: Galaxy: Analyze, Visualize, Communicate], The [[Galaxy]] Team | ||
| [[Galaxy]] | | [[Galaxy]] | ||
+ | | | ||
+ | |- | ||
+ | | align="center" | 4:00-4:15 | ||
+ | | [http://www.iscb.org/ismb2010-program/satellite-meetings#BOSC BOSC] | ||
+ | | [http://www.open-bio.org/w/images/d/df/34_BOSC2010.pdf GBrowse2], [[User:Lstein|Lincoln Stein]] | ||
+ | | [[GBrowse]] | ||
+ | | [http://prezi.com/xwpsks7tnnd8/gbrowse-20-bosc-talk/ Prezi] | ||
+ | |- | ||
+ | ! colspan="6" | | ||
|- | |- | ||
! rowspan="3" | Sunday July 11 | ! rowspan="3" | Sunday July 11 | ||
Line 38: | Line 74: | ||
| rowspan="2" | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php Posters] | | rowspan="2" | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php Posters] | ||
| [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=I I01: AGeS: A Software System for Annotation and Analysis of Genome Sequences], Nela Zavaljevski | | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=I I01: AGeS: A Software System for Annotation and Analysis of Genome Sequences], Nela Zavaljevski | ||
− | | [[GBrowse]] | + | | [[DIYA]], [[GBrowse]] |
+ | | [[Media:AGesISMB2010Poster.pptx|PPT]], [[Media:AGesISMB2010Poster.pdf|PDF]] | ||
|- | |- | ||
| [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=I I15: GBrowse and Next Generation Sequencing Data], [[User:Scott|Scott Cain]] | | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=I I15: GBrowse and Next Generation Sequencing Data], [[User:Scott|Scott Cain]] | ||
| [[GBrowse]] | | [[GBrowse]] | ||
+ | | | ||
|- | |- | ||
| align="center" | 2:30-3:25 | | align="center" | 2:30-3:25 | ||
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| [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT08 TT08: InterPro protein sequence analysis and classification], Sarah Hunter | | [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT08 TT08: InterPro protein sequence analysis and classification], Sarah Hunter | ||
| [[BioMart]] | | [[BioMart]] | ||
+ | | | ||
+ | |- | ||
+ | ! colspan="6" | | ||
|- | |- | ||
! rowspan="9" | Monday July 12 | ! rowspan="9" | Monday July 12 | ||
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| [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=E E02: An Advanced Web Query Interface for Biological Databases], Peter Karp | | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=E E02: An Advanced Web Query Interface for Biological Databases], Peter Karp | ||
| [[Pathway Tools]] | | [[Pathway Tools]] | ||
+ | | [[Media:PathwayToolsPosterISMB2010.ppt|PPT]], [[Media:PathwayToolsPosterISMB2010.pdf|PDF]] | ||
|- | |- | ||
| [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=E E18: ZFNGenome: A GBrowse-based tool for identifying Zinc Finger Nuclease target sites in model organisms], Deepak Reyon | | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=E E18: ZFNGenome: A GBrowse-based tool for identifying Zinc Finger Nuclease target sites in model organisms], Deepak Reyon | ||
| [[GBrowse]] | | [[GBrowse]] | ||
+ | | [[Media:ZFNGenomeGBrowseISMB2010.pdf|PDF]] | ||
|- | |- | ||
| [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=E E30: Choosing a Genome Browser for a Model Organism Database: Surveying the Maize Community], Taner Sen | | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=E E30: Choosing a Genome Browser for a Model Organism Database: Surveying the Maize Community], Taner Sen | ||
| [[GBrowse]] | | [[GBrowse]] | ||
+ | | [[Media:MaizeGDBGBrowseISMB2010.pdf|PDF]] | ||
|- | |- | ||
− | | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=I I10: ISGA - An Intuitive Web Server for Prokaryotic Genome Annotation and Other Analyses], [[User:Chemmeri|Christopher Hemmerich]] | + | | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=I I10: Integrative Services for Genomic Analysis (ISGA) - An Intuitive Web Server for Prokaryotic Genome Annotation and Other Analyses], [[User:Chemmeri|Christopher Hemmerich]] |
| [[Ergatis]] | | [[Ergatis]] | ||
+ | | [[Media:ISGAISMB2010Poster.pdf|PDF]] | ||
|- | |- | ||
| [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=J J60:Online Quantitative Transcriptome Analysis], Regina Bohnert | | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=J J60:Online Quantitative Transcriptome Analysis], Regina Bohnert | ||
| [[Galaxy]] | | [[Galaxy]] | ||
+ | | [[Media:Oqtans_Online_Quantitative_Transcriptome_AnalysisISMB2010.pdf|PDF]] | ||
|- | |- | ||
| [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=U U60: Galaxy NGS functionality from sample tracking to SNP calling: An interactive poster], Ramkrishna Chakrabarty | | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=U U60: Galaxy NGS functionality from sample tracking to SNP calling: An interactive poster], Ramkrishna Chakrabarty | ||
| [[Galaxy]] | | [[Galaxy]] | ||
+ | | [[Media:GalaxyNGSISMB2010.pdf|PDF]] | ||
|- | |- | ||
| [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=Z Z02: WebGBrowse - A Web Server for GBrowse], Ram Podicheti | | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=Z Z02: WebGBrowse - A Web Server for GBrowse], Ram Podicheti | ||
| [[WebGBrowse]] | | [[WebGBrowse]] | ||
+ | | | ||
|- | |- | ||
| align="center" | 3:30-3:55 | | align="center" | 3:30-3:55 | ||
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| [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT26 TT26: NGS Analysis with Galaxy on the Cloud], Anton Nekrutenko | | [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT26 TT26: NGS Analysis with Galaxy on the Cloud], Anton Nekrutenko | ||
| [[Galaxy]] | | [[Galaxy]] | ||
+ | | | ||
|- | |- | ||
| align="center" | 4:00-4:25 | | align="center" | 4:00-4:25 | ||
| [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT28 TT28: Sample tracking and automated data processing in Galaxy for NGS facilities], Anton Nekrutenko | | [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT28 TT28: Sample tracking and automated data processing in Galaxy for NGS facilities], Anton Nekrutenko | ||
| [[Galaxy]] | | [[Galaxy]] | ||
+ | | | ||
+ | |- | ||
+ | ! colspan="6" | | ||
|- | |- | ||
− | ! rowspan=" | + | ! rowspan="3" | Tuesday July 13 |
| align="center" | 11:15-11:40 | | align="center" | 11:15-11:40 | ||
| [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php Technology] | | [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php Technology] | ||
| [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT32 TT32: GMOD Presents GBrowse 2.0 and JBrowse], [[User:Scott|Scott Cain]] | | [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT32 TT32: GMOD Presents GBrowse 2.0 and JBrowse], [[User:Scott|Scott Cain]] | ||
| [[GBrowse]], [[JBrowse]] | | [[GBrowse]], [[JBrowse]] | ||
+ | | [http://prezi.com/nx4jy4etq-ug/gbrowse-20-and-jbrowse-for-ismb/ Prezi] | ||
+ | |- | ||
+ | | align="center" | 11:45-?? | ||
+ | | Lunch | ||
+ | | Informal gathering at the ISMB lunch. Please look for [[User:Scott|Scott Cain]] in the back center of the lunch room. There will be "GMOD reserved" table tents on a few tables back there and Scott will be wearing his [http://www.cafepress.com/GenericMOD GMOD shirt]. Please stop by and chat if you are at ISMB. | ||
+ | | | ||
+ | | | ||
|- | |- | ||
| align="center" | 2:45-3:10 | | align="center" | 2:45-3:10 | ||
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| [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT38 TT38: Demonstration of The Pathway Tools Software and BioCyc Databases], Peter Karp. ([[Pathway Tools]] is also featured in the [http://www.iscb.org/cms_addon/conferences/ismb2010/artscience.php Art and Science Exhibition].) | | [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT38 TT38: Demonstration of The Pathway Tools Software and BioCyc Databases], Peter Karp. ([[Pathway Tools]] is also featured in the [http://www.iscb.org/cms_addon/conferences/ismb2010/artscience.php Art and Science Exhibition].) | ||
| [[Pathway Tools]] | | [[Pathway Tools]] | ||
+ | | [[:Media:PathwayToolsTalkISMB2010.ppt|PPT]], [[:Media:PathwayToolsTalkISMB2010.pdf|PDF]] | ||
+ | |} | ||
+ | |||
+ | == Flier == | ||
+ | |||
+ | {| | ||
+ | |[[File:GMODatISMB2010Thumb.png|Media:GMODatISMB2010.pdf|GMOD at ISMB 2010]] | ||
+ | |A [[:Image:GMODatISMB2010.pdf|flier]] highlighting GMOD related content at ISMB 2010 is [[:Image:GMODatISMB2010.pdf|now available]]. You can print this ahead of time, or pick up a copy from several of the speakers. | ||
|} | |} | ||
[[Category:Conferences]] | [[Category:Conferences]] |
Latest revision as of 01:23, 3 October 2012
GMOD will also have a strong presence at ISMB/ECCB 2011.
|
ISMB 2010 was held July 9-13 in Boston. As in past years, there was once again significant GMOD content at ISMB, including
|
Events, Talks, and Posters
Flier
A flier highlighting GMOD related content at ISMB 2010 is now available. You can print this ahead of time, or pick up a copy from several of the speakers. |