Difference between revisions of "Gbgff"
From GMOD
(→Server-side) |
|||
| Line 15: | Line 15: | ||
==Server-side== | ==Server-side== | ||
* No special configuration is required. | * No special configuration is required. | ||
| − | * Tracks are configures as normal (see the [http://www.gmod.org/gbrowse-cgi/tutorial/tutorial.html Gbrowse tutorial] and the Configure HOWTO for details) | + | * Tracks are configures as normal (see the [http://www.gmod.org/gbrowse-cgi/tutorial/tutorial.html Gbrowse tutorial] and the [[CONFIGURE_HOWTO|Configure HOWTO]] for details) |
==Client-side== | ==Client-side== | ||
Revision as of 13:39, 19 March 2008
gbgff is a GFF3 dumper script that come packaged with GBrowse version 1.69 and later. Its purpose is the export configured annotations from one instance of Gbrowse to another.
- It is analogous to DAS, except that:
- It supports both server and client-side configuration of glyph rendering
- It supports 3-level gene models and other multi-level features made possible by GFF3
Installation
- gbgff does not require an special set-up, it is installed with Gbrowse.
- This application has only been tested with servers using a GFF-3 back-end with Bio::SeqFeature::Store
Configuration
Server-side
- No special configuration is required.
- Tracks are configures as normal (see the Gbrowse tutorial and the Configure HOWTO for details)
Client-side
# Dirt simple GFF3 dumper, suitable for a lightweight replacement to DAS. # Call this way: # http://my.host/cgi-bin/gbgff/volvox?q=ctgA:1..2000;t=Genes+ExampleFeatures # # From within the "Add Remote Annotations" section, you can say: # http://my.host/cgi-bin/gbgff/volvox?q=$segment;t=Genes+ExampleFeatures
