Difference between revisions of "Galaxy"
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*[http://galaxyproject.org Home Page] | *[http://galaxyproject.org Home Page] | ||
*[http://usegalaxy.org Public Server] | *[http://usegalaxy.org Public Server] | ||
− | *[http://galaxyproject.org/ | + | *[http://wiki.galaxyproject.org/ Galaxy Wiki] |
*[http://getgalaxy.org Download / Cloud] | *[http://getgalaxy.org Download / Cloud] | ||
*[[Galaxy Tutorial]] | *[[Galaxy Tutorial]] | ||
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The [http://wiki.galaxyproject.org/Events/GCC2013 2013 Galaxy Community Conference (GCC2013)] will be held June 30 through July 2 at the University of Oslo in Oslo, Norway. GCC2013 will feature a Tutorial Day followed by two days of presentations, discussions, lightning talks, breakouts, and keynotes on extending Galaxy to use new tools and data sources, deploying Galaxy at your organization, and best practices for using Galaxy to further your research. | The [http://wiki.galaxyproject.org/Events/GCC2013 2013 Galaxy Community Conference (GCC2013)] will be held June 30 through July 2 at the University of Oslo in Oslo, Norway. GCC2013 will feature a Tutorial Day followed by two days of presentations, discussions, lightning talks, breakouts, and keynotes on extending Galaxy to use new tools and data sources, deploying Galaxy at your organization, and best practices for using Galaxy to further your research. | ||
− | [http://wiki.galaxyproject.org/Events/GCC2012 GCC2012] was held in Chicago had over 200 attendees. Slides and videos of all talks at [http://wiki.galaxyproject.org/Events/GCC2012 GCC2012] and | + | [http://wiki.galaxyproject.org/Events/GCC2012 GCC2012] was held in Chicago had over 200 attendees. Slides and videos of all talks at [http://wiki.galaxyproject.org/Events/GCC2012 GCC2012] and [http://wiki.galaxyproject.org/Events/GCC2011 GCC2011] are available on the Galaxy wiki. |
==Downloads== | ==Downloads== | ||
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==Using Galaxy== | ==Using Galaxy== | ||
− | Please visit the [http://wiki. | + | Please visit the [http://wiki.galaxyproject.org/ Galaxy Wiki] for full documentation on all aspects of getting, installing, and using Galaxy. |
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===Tutorials=== | ===Tutorials=== | ||
− | The Galaxy wiki has a number of [http:// | + | The Galaxy wiki has a number of [http://wiki.galaxyproject.org/Screencasts screencasts] on how to use Galaxy for several example tasks. |
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See [[:Category:Galaxy]] | See [[:Category:Galaxy]] | ||
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<references /> | <references /> | ||
− | See also [http://galaxyproject.org | + | See also [http://wiki.galaxyproject.org/CitingGalaxy Citing Galaxy] and the [http://www.citeulike.org/group/16008/order/to_read,desc, Galaxy CiteULike Group]. |
[[Category:Analysis]] | [[Category:Analysis]] |
Revision as of 06:02, 16 November 2012
Contents
About Galaxy
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.
- Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
- Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
- Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.
Visit the Galaxy Project home page.
2013 Galaxy Community Conference
The 2013 Galaxy Community Conference (GCC2013) will be held June 30 through July 2 at the University of Oslo in Oslo, Norway. GCC2013 will feature a Tutorial Day followed by two days of presentations, discussions, lightning talks, breakouts, and keynotes on extending Galaxy to use new tools and data sources, deploying Galaxy at your organization, and best practices for using Galaxy to further your research.
GCC2012 was held in Chicago had over 200 attendees. Slides and videos of all talks at GCC2012 and GCC2011 are available on the Galaxy wiki.
Downloads
Galaxy download and installation information is at GetGalaxy.org.
Galaxy aims to be a zero configuration entirely self-contained system that provides a lightweight webserver, an embedded database and a multi-threaded job manager. All tools (and their parameters) can be specified via simple XML based configuration files.
Using Galaxy
Please visit the Galaxy Wiki for full documentation on all aspects of getting, installing, and using Galaxy.
Publications, Tutorials, and Presentations
Publications on or mentioning Galaxy
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. PMID:20738864 [1]
- Galaxy: a web-based genome analysis tool for experimentalists". PMID:20069535 [2]
Tutorials
The Galaxy wiki has a number of screencasts on how to use Galaxy for several example tasks.
Contacts and Mailing Lists
Mailing List Link | Description | Archive(s) | |
---|---|---|---|
Galaxy (Search everything) |
galaxy-announce | Announcements of interest to the Galaxy community. Low volume and moderated. | Nabble, Mailman |
Galaxy Help | General questions and discussion about using Galaxy. Also used for announcements relevant to the Galaxy user community. This is not a mailing list, but an online forum, based on the popular Discourse platform. High volume. | ||
galaxy-dev | Discussion and questions regarding local installations and development of Galaxy. Medium volume. | Nabble, Mailman |
More on Galaxy
See Category:Galaxy
- ↑ Cite error: Invalid
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tag; no text was provided for refs namedPMID:20738864
- ↑ Cite error: Invalid
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tag; no text was provided for refs namedPMID:20069535
See also Citing Galaxy and the Galaxy CiteULike Group.