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[[Category:Analysis]] | [[Category:Analysis]] |
Revision as of 22:06, 1 March 2013
Contents
About Galaxy
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.
- Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
- Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
- Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.
2014 Galaxy Community Conference
The 2014 Galaxy Community Conference (GCC2013) will be held June 30 through July 2, at the Homewood Campus of Johns Hopkins University], in Baltimore, Maryland, United States.
Galaxy Community Conferences are an opportunity to participate in presentations, discussions, poster sessions, lightning talks and breakouts, all about high-throughput biology and the tools that support it. The conference will also includes a Training Day offering in-depth topic coverage, across several concurrent sessions. See the GCC2013 web site for an idea of what happens at a Galaxy Community Conference. The GCC2013 site includes links to slides and videos for all accepted talks.
Visit the Galaxy website.
Screenshots
Downloads
- Download Galaxy: http://getgalaxy.org
- The source code for Galaxy can be downloaded from https://bitbucket.org/galaxy/.
Using Galaxy
Galaxy aims to be a zero configuration entirely self-contained system that provides a lightweight webserver, an embedded database and a multi-threaded job manager. All tools (and their parameters) can be specified via simple XML based configuration files.
Full documentation on all aspects of getting, installing, and using Galaxy is available from the Galaxy Wiki.
Documentation
- General Galaxy info
- User documentation
- Source code documentation
- Search the whole universe of Galaxy docs
Publications, Tutorials, and Presentations
Publications on or mentioning Galaxy
See Citing Galaxy for a core list of 25+ papers on Galaxy, and the Galaxy CiteULike group for a fuller list of papers mentioning or using Galaxy.
Tutorials
- Galaxy Tutorial
- As taught at the 2013 GMOD Summer School
- Galaxy Learning Hub
- A wealth of training materials, including:
- RNA-Seq Example
- An introduction to NGS processing (specifically RNA-Seq) with Galaxy.
- OpenHelix Galaxy User Tutorial
- A Flash based tutorial on using Galaxy. Provided by OpenHelix. Tutorial includes slides, handouts and exercises. Requires subscription.
Contacts and Mailing Lists
Mailing List Link | Description | Archive(s) | |
---|---|---|---|
Galaxy (Search everything) |
galaxy-announce | Announcements of interest to the Galaxy community. Low volume and moderated. | Nabble, Mailman |
Galaxy Help | General questions and discussion about using Galaxy. Also used for announcements relevant to the Galaxy user community. This is not a mailing list, but an online forum, based on the popular Discourse platform. High volume. | ||
galaxy-dev | Discussion and questions regarding local installations and development of Galaxy. Medium volume. | Nabble, Mailman |
Galaxy in the wild
Public installations of Galaxy: Galaxy maintains a list of public Galaxy servers
Galaxy Development
Development team
The Galaxy Development Team are listed on the Galaxy wiki; in addition to the core developers, there are also extensive contributions from the Galaxy user community.
More on Galaxy
See Category:Galaxy
Raw tool data at Galaxy/tool data