Edit Tool data: GO Graphic Viewer

You do not have permission to edit this page, for the following reason:

The action you have requested is limited to users in the group: Users.

The Basics[edit]

Name:
Full name	if name is an abbreviation, acronym, etc.
Status:
Current development:
Support status:
Tool classification or features:	Ontology Visualization
Platform:	If the tool linux unix os x windows web vm cloud
Brief description:	The GO Graphic Viewer module (Bio::GMOD::GO::View) generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the result from the GO::TermFinder Perl module created by the Stanford Microarray Database (SMD). This module is useful when analyzing experimental or computational results that produce a set of gene products that may have a common function or process. This distribution also includes two examples of its use in web browser-based user interfaces (goView.pl and goTermFinder.pl).
Open source:
Software licence:
Type of input data	e.g. genomic sequence; taxonomic group; protein identifier; anatomy ontology, etc.
Input formats:	gene or ORF names, OBO ontology
Output formats:
Programming language(s)
Intended usage
First public release
Use standard tool display template?	yes

Files[edit]

Logo (file name)	enter the name of the file on the GMOD wiki, e.g. CoolAppLogo.png
Screenshot(s)

Contact details[edit]

Contact email
Mailing list(s)

Links[edit]

The majority of links related to the tool should be added using the interface at the bottom of the page.

Download text	If there is not a simple download URL for downloading the tool, please enter download instructions here. Download URLs can be entered in the 'Links' section below.
Download source code text	If there is not a simple download URL for downloading the source code for the tool, please enter download instructions here. URLs can be entered in the 'Links' section below.

Materials[edit]

Publications
Presentations
Tutorials

Extra Textual Goodies[edit]

Any introductory text for users
Software prerequisites	* [http://www.apache.org Apache web server] * Perl 5.005 or higher * {{CPAN\|GD}} * {{CPAN\|CGI}} * [http://www.graphviz.org/ GraphViz] * {{CPAN\|GO::TermFinder}} * [http://bioperl.org Bioperl]
Installation
Configuration
Documentation	Documentation is provided in the README file in the [http://sourceforge.net/projects/gmod/files/GOView/ GO Graphic Viewer download package].
Development team	Gavin Sherlock, Stanford University
Development status
Download/usage tracking
Logo info
See also	Any extra information, links, etc.
Extra items for component box

Free text:

[[Category:GMOD Components]] [[Category:Ontologies]] [[Category:SGD]] [[Category:GMOD Component]]

Links

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

Interoperable components

Upload a related file

Summary:

This is a minor edit Watch this page

Cancel

Available on platform	web +, linux +, os x + and unix +
Has URL	http://sourceforge.net/projects/gmod/files/GOView/ + and http://www.yeastgenome.org/cgi-bin/GO/goTermFinder.pl +
Has description	The GO Graphic Viewer module (Bio::GMOD::G … The GO Graphic Viewer module (Bio::GMOD::GO::View) generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the result from the GO::TermFinder Perl module created by the Stanford Microarray Database (SMD). This module is useful when analyzing experimental or computational results that produce a set of gene products that may have a common function or process. This distribution also includes two examples of its use in web browser-based user interfaces (goView.pl and goTermFinder.pl).nterfaces (goView.pl and goTermFinder.pl). +
Has development status	inactive +
Has input format	gene or ORF names + and OBO ontology +
Has software maturity status	mature +
Has support status	active +
Has topic	GO Graphic Viewer +
Is open source	Yes +
Link type	source code + and public server +
Release date	2003 +
Tool functionality or classification	Ontology Visualization +
Written in language	Perl +
Has subobjectThis property is a special property in this wiki.	GO Graphic Viewer#http://sourceforge.net/projects/gmod/files/GOView/ + and GO Graphic Viewer#http://www.yeastgenome.org/cgi-bin/GO/goTermFinder.pl +

Edit Tool data: GO Graphic Viewer

Contents

The Basics[edit]

Files[edit]

Contact details[edit]

Links[edit]

Materials[edit]

Extra Textual Goodies[edit]

Navigation menu

Personal tools

Namespaces

Variants

Views

Actions

Search

Navigation

Documentation

Community

Tools