GMOD Users

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GMOD Users

The following is a selection of the databases using GBrowse or Chado or some other popular component of GMOD. For a list of related publications see Publications. At the bottom of the page there is a list of GBrowse users.

Name Description Location Chado
A. fumigatus TIGR/Sanger Assembly
ANISEED Ascidian Network for In Situ Expression and Embryological Data
ATIDB Arabidopsis
AZM-to-BAC Viewer
AZM-to-Gene Viewer
BeetleBase Gbrowse UI Yes
BGD Bovine Genome Database
BioHealthBase BioDefense Public Health Database
Blochmannia pennsylvanicus
Bovine QTL Viewer
Brachionus plicatilis A
Brachionus plicatilis B
Cattle EST Gene Family Database
CGD Candida Genome Database
CGL Comparative Genomics Library
ChromDB Plant Chromatin Database
Chromosome 7 Annotation Project
CSHLmpd Mammalian Promoter Database
Database of Genomic Variants
DictyBase Yes
Emiliania huxleyi
Enterocytozoon bieneusi
Environmental Sampling Site 396, Fosmid 68
Environmental Sampling Site 396, Fosmid 87
Environmental Sampling Site 396, Fosmids_6_ 56
Environmental Sampling Site Loihi, Red Clone 1
Environmental Sampling Site Loihi, Red Clone 2
FlyBase Yes
Fungal Comparitive Genomics
Fungal Telomere Browser
Gallus gallus Gallus gallus SAGE
Gallus Genome Browser
GeneDB Pathogen Sequenceing Unit Yes
Human 2q33
Human Genome Segmental Duplication Database
IVDB Influenza Virus Database
Leishmania tarentolae RNA editing database
LIS Legume Information System
MAGI Maize Assembled Genomic Island
Marinobacter aquaeolei
Marinobacter aquaeolei FOSMID 38/33.
Non-Human Segmental Duplication Database
OMAP Oryza Map Alignment Project
Oncorhynchus tshawytscha Chinook salmon SAGE
Oryza Chromosome 8
ParameciumDB Yes
Philodina roseola
PlantsDB MIPS PlantsDB
PlasmoDB Plasmodium Genome Resource
PseudoCAP Pseudomonas Genome Database
PUMAdb Princeton Microarray Database, Chado
RGD Rat Genome Database
Schistosoma mansoni
Schistosoma mansoni EST
SCRI Plant Bioinformatics Group Yes
S. cerevisiae Proteome Browser
SGD Lite
SmedDB Planaria ESTs Yes
SOL Genomics Network Yes
Soybean Gbrowse Database
Synechococcus 4320_2
Synechococcus CC9605
Synechococcus CC9902
Synechococcus RS9916
Synechococcus RS9917
Synechococcus WH5701
Synechococcus WH7805
T1DBase Type 1 Diabetes Database
TGD Tetrahymena Genome Database
TGI The Gene Index Project
TIGR The Institute for Genomic Research Yes
TIGR Medicago BACs
TIGR Rice Genome Browser
ToxoDB Toxoplasma gondii database
TriAnnot BAC Viewer
Trypanosoma brucei brucei
Trypanosoma brucei brucei GenBank Entries
Trypanosoma brucei brucei RNA editing database
Trypanosoma brucei gambiense
Trypanosoma brucei rhodesiense
Trypanosoma cruzi
UNH HCGS Tetraodon Genome Browser Gbrowse plus GFF
VectorBase Chado, DAS, Apollo Yes
Vicogenta Viewer for Comparing Genomes to Arabidopsis
wFleaBase Daphnia Yes
XanthusBase Yes
Trichomona vaginalis Yes
Microarray data, Chado, H. sapiens Yes Yes

GBrowse Users

This is a list of confirmed GBrowse users as of April 2004.

  • Agricultural Biotechnology Center, Hungary
  • BAWI, S. Korea
  • Baylor College of Medicine
  • Biocrates GmbH, Innsbruck
  • Brandeis University
  • Bristol-Meyers Squibb
  • British Columbia Centre for Diseaes Control
  • CIRAD, France
  • CSIRO, Australia
  • Cambridge University (multiple labs)
  • Center for Genomics & Bioinformatics, Stockholm
  • Center for Genomics and Bioinformatics, Stockholm
  • Centre de Genetique Moleculaire, CNRS
  • Cold Spring Harbor Laboratory (multiple labs)
  • Compugen
  • Concordia University, Canada
  • Cornell Medical School
  • Cornell University
  • DNA Landmarks, Inc.
  • Donald Danforth Plant Sciences Center
  • Duke University (multiple labs)
  • EMBL, Heidelberg
  • EuGenes (hacked copy)
  • Faculdade de Medicina de Ribeiro Preto, So Paulo
  • FlyBase
  • Foundation for Research and Technology, Crete
  • Fundao Hemocentro, Sao Paolo
  • Genoscope, France
  • GrainGenes
  • Harvard University
  • Hospital for Sick Kids, Toronto
  • Illinois Institute of Technology
  • Incyte Corporation
  • Inpharmatica, Ltd.
  • Institute for Systems Biology, Seattle
  • Institute of Molecular and Cell Biology, Singapore
  • International Rice Research Institute, Phillipines
  • John Innes Centre
  • KEGG
  • Kansas State University
  • Karolinska Institute
  • Kennedy Krieger Institute
  • Lawrence Berkeley Laboratories
  • Marine Biological Laboratories, Woods Hole
  • Massachusetts Institute of Technology (multiple labs)\
  • Mayo Institute
  • McGill University
  • Meat Animal Research Center, University of Nebraska
  • Medical University of South Carolina
  • Michigan State University
  • National Cancer Institute, Frederick Cancer Center
  • New York University (multiple labs)
  • North Carolina State University
  • Northern Illinois University
  • Northwestern University
  • Oklahoma State University
  • Open Informatics Consulting Corp.
  • Oxagen Corp.
  • Pasteur Institute, Paris
  • Pioneer Corporation
  • QIAGEN Operon Corp.
  • RIKEN (multiple labs)
  • RatDB
  • Regulome, Inc.
  • Rhobio (Bayer CropScience SA & Biogemma joint venture)
  • Rigshospitalet, Copenhagen
  • Rockefeller University
  • Roslin Institute, Edinburgh
  • Russian Academy Medical Sciences
  • Serono International Corp, Geneva
  • Simon Frasier University
  • South Africa National Bioinformatics Institute
  • Southern Illinois University
  • St. Jude Children's Research Hospital, Memphis
  • Stowers Institute for Medical Research
  • Texas A&M (multiple labs)
  • The Institute for Genome Research
  • Tulane University
  • Tulane University
  • University California Davis
  • University of Arizona (multiple labs)
  • University of British Columbia
  • University of California Santa Barbara
  • University of Georgia (multiple labs)
  • University of Minnesota
  • University of Muenster
  • University of New South Wales, Australia
  • University of Oklahoma (multiple labs)
  • University of Pennsylvania (multiple labs)
  • University of Southern California
  • University of Texas
  • University of Toronto
  • University of Virginia
  • University of Washington
  • Universitt Giessen
  • Universit de Lige, Belgium
  • Wageningen Universiteit & Researchcentrum, Netherlands
  • Washington University at St. Louis (multiple labs)
  • WormBase
  • deVGen, Belgium