Difference between revisions of "GMOD Users"

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| http://rpop.psc.riken.jp/cgi-bin/gbrowse/pop_ver20080425/ || RIKEN || Multiple organisms || GBrowse || 2013
| http://rpop.psc.riken.jp/cgi-bin/gbrowse/pop_ver20080425/ || RIKEN || Multiple organisms || GBrowse || 2013
| http://bioinfo.genotoul.fr/RNAbrowse || RNAbrowse || integrated environment for analysis of RNA-seq results || JBrowse, Galaxy, BioMart || 2014
| http://rnaspace.org/ || RNAspace || an integrated environment for non-coding RNA annotation || JBrowse || 2013
| http://rnaspace.org/ || RNAspace || an integrated environment for non-coding RNA annotation || JBrowse || 2013

Revision as of 21:53, 29 May 2014

The following is a selection of the websites (including organism databases, research groups, and software) using GBrowse, JBrowse, Chado, or some other popular component of GMOD. For a list of related publications see Publications.

Check out the map of GMOD users around the world!

URL Name Description Components Checked
http://agripestbase.org Agripestbase Agricultural pests 2013
http://agripestbase.org/hessianfly Hessian fly part of Agripestbase 2013
http://agripestbase.org/manduca Manduca sexta part of Agripestbase 2013
http://amborella.org Amborella Genome Database Amborella GBrowse, Tripal 2014
http://amoebadb.org AmoebaDB Amoeba (part of EupathDB) 2013
http://animalgenome.org National Animal Genome Research Program Animal genomes! GBrowse 2013
http://aniseed-ibdm.univ-mrs.fr/ ANISEED Ascidian Network for In Situ Expression and Embryological Data GBrowse 2013
http://www.appliedgenomics.org/ Istituto di Genomica Applicata, Italy Plant resources GBrowse 2013
http://www.aphidbase.com/ AphidBase Pea aphid genome Apollo, Chado, Galaxy, GBrowse, Cycs 2013
http://www.arabidopsis.org TAIR 2013
http://arpcard.mcmaster.ca/ The Comprehensive Antibiotic Resistance Database Bioinformatics database of resistance genes, their products and associated phenotypes. Chado, GBrowse, Textpresso 2013
http://aspergillusgenome.org/ AspGD Aspergillus JBrowse, Sybil 2013
http://asrp.danforthcenter.org/ Arabidopsis Small RNA Project (ASRP) Arabidopsis JBrowse 2013
http://atidb.org ATIDB Arabidopsis thaliana Integrated Database GBrowse 2013
http://augustus.gobics.de/predictions/chlamydomonas/ Augustus AUGUSTUS predictions for Chlamydomonas GBrowse 2013
http://aviangenomes.org Avian Genomes Bird spp JBrowse 2013
http://banana-genome.cirad.fr/ Banana Genome Hub Bananas! Tripal 2013
http://bce.uniandes.edu.co/ Computational and Evolutionary Biology group Chlamydomonas FAIREseq experiments [1] GBrowse 2013
http://beetlebase.org/ BeetleBase Tribolium castaneum Gbrowse, JBrowse, Chado 2013
http://bioinf.gen.tcd.ie/jbrowse/SL1344/ Salmonella transcriptional map of S. Typhimurium JBrowse 2013
http://bioinf.hutton.ac.uk/public/ JHI Plant Bioinformatics Group James Hutton Institute Chado 2013
http://bioinf.scri.ac.uk/barley_snpdb/index.html Barley SNP db Barley SNPs (at JHI) CMap 2013
http://bioinfo.cau.edu.cn/ProFITS/index.php ProFITS Protein Families Involved in the Transduction of Signalling (Maize) JBrowse, GBrowse 2013
http://bioinfo.ccbusm.edu.my/cgi-bin/gb2/gbrowse/Rubber/ Rubber Genome Browser (not accessible to public - Mar 2013) 2013
http://bioinfo2.ugr.es/NGSmethDB/ NGSmethDB NGSmethDB: A database for next-generation sequencing single-cytosine-resolution DNA methylation data JBrowse 2013
http://bioinformatics.ai.sri.com/ptools/ Pathway Tools Home of Pathway Tools 2013
http://bioinformatics.cau.edu.cn/SFGD/ SFGD Soybean Functional Genomics Database GBrowse 2013
http://bovinegenome.org/ BGD Bovine Genome Database Apollo, GBrowse 2013
http://www.brachybase.org/ Brachypodium JBrowse 2013
http://brassicadb.org/brad/ BrassicaDB Brassica species GBrowse 2014
http://bugs.sgul.ac.uk/bugsbase/ BµG@Sbase Bacterial Microarray Group at St George's (BµG@S), London GBrowse 2013
http://butterflybase.ice.mpg.de/ ButterflyBase (part of InsectaCentral) Butterflies and moths GBrowse 2013
http://www.cassavabase.org/ Cassavabase Cassava GBrowse, Pathway Tools 2014
http://www.cacaogenomedb.org Cacao Genome Database Cacao Tripal 2013
http://www.candidagenome.org/cgi-bin/gbrowse/candida_20/ CGD Candida Genome Database 2013
http://cbio.mskcc.org/raetschlab/ Raetsch Lab @ MSKCC Machine learning approaches to genomics and medicine Galaxy, GBrowse 2013
http://chlamy.info/ Chlamydomonas Genome Browser and Wiki Chlamydomonas 2013
http://www.chr7.org/cgi-bin/gbrowse/gbrowse/chr7_v2/ Chromosome 7 Annotation Project 2013
http://www.ciliate.org/ TGD Tetrahymena Genome Database 2013
http://citrus.hzau.edu.cn/orange/ Citrus sinensis annotation project Citrus sinensis GBrowse 2013
http://www.citrusgenomedb.org Citrus Genome Database Citrus Tripal 2013
http://citrusgreening.org/ Citrus Greening pathogens causing citrus greening (Huanglongbing or HLB), esp. Liberibacter 2013
http://cocoagendb.cirad.fr/ CocoaGenDB Cocoa GBrowse, CMap 2013
http://www.coccidia.icb.usp.br/eimeriatdb/ Eimeria transcript database Annotated transcripts of protozoan parasites of the genus Eimeria 2013
http://compbio.dfci.harvard.edu/tgi/ TGI The Gene Index Project: uses ESTs and gene sequences to predict genes and variants GBrowse 2013
http://www.comparative-legumes.org/ LIS Legume Information System CMap 2013
http://corynebacterium.um.edu.my/index.php/home/main CoryneBase Corynebacterium, a small, rod-shaped, Gram-positive bacteria [2] JBrowse 2014
http://cancer.sanger.ac.uk/cancergenome/projects/cosmic/ COSMIC Cancer Genome Project GBrowse 2014
http://www.cosmoss.org cosmoss.org The Bryophyte Genomics Resource - Physcomitrella patens Annotation GBrowse 2013
http://www.cottongen.org/ Cottongen Tripal 2013
http://crdd.osdd.net/jbrowse/index.html?data=/raghava/genomesrs/rhodo-imt/data Bioinformatics center of Institute of Microbial Technology (IMTECH), Chandigarh. Rhodococcus imtechensis sp. RKJ300 JBrowse 2013
http://cryptodb.org CryptoDB Cryptosporidium (part of EupathDB) GBrowse, Cyc 2013
http://csbl.bmb.uga.edu/DOOR/ DOOR: a Database of prOkaryotic OpeRons Prokaryotic operons JBrowse 2013
http://db-mml.sjtu.edu.cn/ThioFinder/search.html ThioBase A database of thiopeptides featured in genetics and chemistry GBrowse_syn 2013
http://dgv.tcag.ca/ Database of Genomic Variants GBrowse 2013
http://diagcomputing.org/resources/software.php Data-Intensive Academic Grid Provides a VM/cloud image of bioinf. software JBrowse, BioMart, Ergatis, etc. 2013
http://www.dictybase.org DictyBase Chado, GBrowse, more 2013
http://ecobrowser.biosino.org EcoBrowser E. coli transcriptome JBrowse 2013
http://ecocyc.org/ EcoCyc 2013
http://ecoliwiki.net EcoliWiki E. coli 2013
http://www.endophyte.uky.edu/ UKY Genome Projects University of Kentucky; numerous spp GBrowse 2013
http://eqtl.uchicago.edu/cgi-bin/gbrowse/eqtl/ eQTL browser eQTLs identified in recent studies in multiple tissues @ Pritchard lab, UChicago 2013
http://www.equinegenome.org/ Equine Genome Equus caballus GBrowse 2013
http://eupathdb.org EupathDB Eukaryotic pathogens, including Babesia, Crithidia, Cryptosporidium, Edhazardia, Eimeria, Encephalitozoon, Endotrypanum, Entamoeba, Enterocytozoon, Giardia, Gregarina, Hamiltosporidium, Leishmania, Nematocida, Neospora, Nosema, Plasmodium, Theileria, Toxoplasma, Trichomonas, Trypanosoma, and Vivraia 2013
http://fagaceae.org Fagaceae Genomics Web Fagaceae spp, including oak, beech, chestnut, etc. Tripal 2013
http://www.flybase.org FlyBase A Database of Drosophila Genes & Genomes Chado, GBrowse, more 2013
https://www.cistrack.org/flynet/site/ Flynet CisTrack (Cis-regulatory Module Tracking) extension for Drosophila JBrowse 2013
http://fungalgenomes.org/ Fungal Genomes Fungal Genomics Resources 2013
http://fungidb.org/ FungiDB Fungal Genomics Resources 2013
http://fungus.kbrin.uky.edu/cgi-bin/gbrowse/A_fumigatus_tigr_tel_100k A. fumigatus TIGR/Sanger Assembly 2013
http://fungus.kbrin.uky.edu/cgi-bin/gbrowse/S_nodorum_broad_tel_100k S. nodorum Fungal Telomere Browser 2013
http://fvgbrowse.agron.iastate.edu/ Fusarium virguliforme Genome Browser Soybean pathogen F. virguliforme GBrowse 2014
http://gabcsfl.org Cool Season Food Legume Database Cool season legumes, e.g. pea, lentil, chickpea, fava beans, etc. Tripal 2013
http://gbrowse.csbio.unc.edu/cgi-bin/gb2/gbrowse/slep/ Evidence Project Psychiatric Genetics Human GBrowse 2013
http://gbrowse.jcvi.org/gbrowse/ JCVI J. Craig Venter Institute; offers numerous species 2013
http://jcvi.org/medicago/ JCVI Medicago @ J. Craig Venter Institute JBrowse, GBrowse, InterMine, Textpresso 2014
https://gdoc.georgetown.edu/gdoc/ G-DOC Systems medicine platform for personalized oncology JBrowse 2013
http://www.genedb.org GeneDB Pathogen Sequencing Unit Chado, JBrowse 2013
http://www.generationcp.org/ Generation Challenge Programme 2013
http://genolab.inp-toulouse.fr/gb2/gbrowse/medic3/ EcoLab @ INP Toulouse Medicago GBrowse, CMap 2013
http://genome.igib.res.in/cgi-bin/gbrowse/AsianGenome/ Asian Genome Browser Human GBrowse 2013
http://www.genome.ou.edu/ Uni Oklahoma Advanced Center for Genome Technology Various spp GBrowse, JBrowse 2013
http://www.genome.ou.edu/tomato.html Uni of Oklahoma tomato group Solanaceae lycopersicum sequence JBrowse 2013
http://genome.semo.edu/ Southeast Fungal Biology Group Coprinus, Phanerochaete genome GBrowse 2013
http://genomes.sapac.edu.au/bovineqtl/ Bovine QTL Viewer Bos taurus 2013
http://www.genomesunzipped.org/jbrowse/ Genomes Unzipped Human -- personal genomic data made public JBrowse 2013
http://genomics.research.iasma.it/ Istituto Agrario S. Michele all'Adige bioinformatics resources Apple, grape GBrowse, CMap 2013
http://genomsawit.mpob.gov.my/genomsawit/ Malaysian Oil Palm Genome Program (MyOPGP) Oil palm, Elaeis guineensis and E. oleifera MAKER 2014
http://www.genoscope.cns.fr/spip/Ressources-bioinformatiques-du.html Genoscope Multiple organisms GBrowse 2013
http://genexpdb.ou.edu/main/ E. coli GenExpDB E. coli Gene Expression Database JBrowse 2013
http://ghost.zool.kyoto-u.ac.jp/cgi-bin/gb2/gbrowse/kh/ Ghost Database Ciona intestinalis genomic and cDNA resources GBrowse 2013
http://giardiadb.org GiardiaDB Giardia (part of EupathDB) 2013
http://github.com/capsid CaPSID Computational Pathogen Sequence IDentification - open source platform for pathogen sequence identification JBrowse 2013
http://gmod.mbl.edu/ JBPC Generic Model Organism Database servers Huge set of GMOD/GBrowse resources covering many different species 2013
http://www.gnpannot.org/ GNPannot Community system of structural and functional annotation supported by comparative genomics
Produces Chado controller
Chado, others 2013
http://www.gramene.org Gramene Grain resources 2013
http://green.dna.affrc.go.jp/Og/ AfRicA DB African Rice Annotation DataBase GBrowse 2013
http://gresource.hzau.edu.cn/resource/resource.html GResource Rice GBrowse 2014
http://hapmap.ncbi.nlm.nih.gov/index.html.en HapMap 2013
http://www.hardwoodgenomics.org Hardwood Genomics Project Hardwood tree spp Tripal 2013
http://hgdp.uchicago.edu/cgi-bin/gbrowse/HGDP/ Human Genome Diversity Project HGDP @ Pritchard lab, UChicago GBrowse 2013
http://www.hpppi.iicb.res.in/neemgdb/ Neem Genome Database Genome information, gene predictions, EST content and annotated proteins of Azadirachta indica plant species GBrowse 2013
http://huref.nimbusinformatics.com/ HuRef Genome Project Human Ref Genome Project JBrowse 2013
http://hymenopteragenome.org/beebase/ BeeBase The secret life of bees JBrowse 2013
http://hymenopteragenome.org/ant_genomes/ Ant Genomes Portal Ants GBrowse 2013
http://hymenopteragenome.org/nasonia/ NasoniaBase Nasonia wasp GBrowse 2013
http://icemangenome.net/ Ice Man Genome The genome of Ötzi the Iceman JBrowse 2013
http://ich.ciliate.org/ IchDB Ichthyophthirius multifiliis genome 2013
http://cmap.icrisat.ac.in/cmap/index_public.html ICRISAT India CMap 2013
http://www.icugi.org Cucurbit Genomics Database Cucumbers, melons, squashes GBrowse, CMap 2013
http://www.imm.ox.ac.uk/mrc-molecular-haematology-unit Genome Biology Group @ Weatherall Institute of Molecular Medicine example GBrowse 2014
http://informatics.jax.org/ Mouse Genome Informatics Mus musculus 2013
http://inra.fr/lepidodb Lepido dB Lepidoptera database; covers Helicoverpa armigera and Spodoptera frugiperda GBrowse, CMap, Apollo, Chado 2012
http://www.inra.fr/meloidogyne_incognita Meloidogyne incognita Covers phytoparasitic root-knot nematode Meloidogyne incognita. Chado, GBrowse, Apollo 2013
http://insectacentral.org InsectaCentral Repository of insect transcriptomes Chado 2013
http://insects.eugenes.org/DroSpeGe/ DroSpeGe 2013
http://www.iplantcollaborative.org/ iPlant Collaborative cyberinfrastructure and computational tools for plant science 2013
http://iubio.bio.indiana.edu/ IUBio Archive Software and data from Indiana University; includes numerous resources, such as euGenes, DroSpeGe, wFleaBase, etc. Argos 2013
http://www.jcvi.org JCVI J. Craig Venter Institute Numerous GBrowse instances, Chado 2013
http://kbase.science.energy.gov/labs/ KBase Department of Energy Systems Biology Knowledgebase - community resource for predictive biology JBrowse (see KBase labs) 2013
http://knowpulse2.usask.ca/portal/ KnowPulse: Pulse Crop Genomics & Breeding Chickpea, lentil, common bean, pea Tripal 2013
http://krithgenomics.drupalgardens.com/ K-RITH-Hopkins Genomics Web Portal JBrowse 2013
http://lgd.abcc.ncifcrf.gov/cgi-bin/gbrowse/cat/ GARFIELD Genome Annotation Resource Field Felis catus GBrowse 2013
http://www.livestockgenomics.csiro.au/ Livestock Genomics CSIRO Livestock Industries (LI) livestock genomics; covers bovines and ovines 2013
http://lizardbase.org/pages/jbrowse.html LizardBase Anole (lizard) resources JBrowse, Galaxy 2013
http://mabscessus.um.edu.my/ MabsBase Mycobacterium abscessus database JBrowse 2013
http://maizegdb.org MaizeGDB Maize Genetics and Genomics DB 2013
http://marinegenomics.oist.jp/genomes/gallery MarineGenomicsDB @ OIST, Japan Acropora digitifera, Pinctada fucata, Symbiodinium sp. clade B1, Ciona GBrowse 2013
http://www.marinegenomics.org Marine Genomics Multispecies marine organism database Tripal 2013
http://me.lzu.edu.cn/yak/ Yak Genome Database Yak genome GBrowse, GBrowse_syn 2013
http://www.medicinalgenomics.com/the-jane-ome/ The Jane-Ome Cannabis Genome Project, Medicinal Marijuana JBrowse 2013
https://megante.dna.affrc.go.jp/ MEGANTE Web-based annotation system [3] GBrowse 2013
http://mg.dna.affrc.go.jp/ MgEST DB Magnaporthe grisea ESTs GBrowse 2013
http://microb215.med.upenn.edu/gb2/gbrowse/phage_metagenomics/ Phage metagenomics GBrowse 2013
http://microsporidiadb.org MicrosporidiaDB Microsporidia (part of EupathDB) 2013
http://mips.helmholtz-muenchen.de/plant/triticeae/index.jsp MIPS Triticeae genomes database Barley, wheat, rye 2013
http://modencode.oicr.on.ca/fgb2/gbrowse/fly/ MODEncode @ OICR Fly, worm GBrowse 2013
http://morse-ccmar.ualg.pt/edge/ Rdecusdb Grooved Carpet shell clam Ruditapes decussatus [4] Tripal 2013
http://nabic.rda.go.kr/ NABIC RDA Various plant and animal genomes GBrowse_syn, GBrowse 2013
http://ascobase.cgrb.oregonstate.edu/cgi-bin/gb2/gbrowse/ncrassa_public/ Ascobase @ OSU Neurospora crassa GBrowse 2013
http://www.nodai-genome.org/?lang=en Nodai Genome Research Centre Mishimi ushi (aka Bos taurus) Japanese quail, rice GBrowse 2013
http://nypg.bio.nyu.edu/vicogenta/ ViCoGentA Viewer for Comparing Genomes to Arabidopsis 2013
http://oikoarrays.biology.uiowa.edu/Oiko/ OikoBase genome expression database of Oikopleura dioica GBrowse 2013
http://www.opossumbase.org/ OpossumBase Monodelphis domestica Genomic Resources Database GBrowse, JBrowse 2013
http://orygenesdb.cirad.fr/ OryGenesDB Oryza sativa database GBrowse 2013
http://www.oryzasnp.org/ OryzaSNP Consortium Rice SNPs GBrowse 2013
http://paramecium.cgm.cnrs-gif.fr/ ParameciumDB Chado, GBrowse, BioMart 2013
http://pathway.aibn.uq.edu.au/ Nielsen Group Pathway Web Server Saccharopolyspora erythraea, plant data GBrowse, Pathway Tools 2013
http://patricbrc.org PATRIC Pathosystems Resource Integration Center JBrowse 2013
http://peanutbase.org/ PeanutBase Peanuts (not the cartoon) Tripal 2014
http://phytozome.net/ Phytozome Numerous green plants GBrowse, BioMart 2013
http://piroplasmadb.org PiroplasmaDB Piroplasma (part of EupathDB) 2013
http://plasmodb.org PlasmoDB Plasmodium (part of EupathDB) 2013
http://plantsmallrnagenes.psu.edu/ Plant Small RNA Genes WebServer small RNA-producing genes from plants JBrowse 2013
http://pipa.biolab.si/hp/index.html PIPA, next-gen sequencing analytics Tool for the analysis of RNA-seq transcriptomics data JBrowse 2013
http://porteco.org PortEco Portal for E. coli data GBrowse, JBrowse, Pathway Tools 2013
http://popgenie.org/ PopGenIE The Populus Genome Integrative Explorer Galaxy 2013
http://www.possumbase.org.nz/ PossumBase EST DB for the brushtail possum, Trichosurus vulpecula GBrowse 2013
http://potato.plantbiology.msu.edu/index.shtml SpudDB Potatoes! GBrowse, Chado 2013
http://promisegenome.uitm.edu.my/cgi-bin/gbrowse/hgmalay/ Malay Human Genome Project Human GBrowse 2013
http://proteomics.ysu.edu/tools/index.html Youngstown State University Proteomics/Genomics Research Group Brachypodium GBrowse 2013
http://pseudomonas.com/ PseudoCAP Pseudomonas Genome Database GBrowse, Cyc 2013
http://qtaro.abr.affrc.go.jp/ QTARO QTL Annotation Rice Online GBrowse 2013
http://rapdb.dna.affrc.go.jp/ Rice Annotation Project DB GBrowse 2013
http://research.nhgri.nih.gov/mnemiopsis/ Mnemiopsis Genome Project The ctenophore Mnemiopsis leidyi JBrowse 2013
http://rgd.mcw.edu RGD Rat Genome Database 2013
http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice MSU Rice Genome Browser 2013
http://rpop.psc.riken.jp/cgi-bin/gbrowse/pop_ver20080425/ RIKEN Multiple organisms GBrowse 2013
http://bioinfo.genotoul.fr/RNAbrowse RNAbrowse integrated environment for analysis of RNA-seq results JBrowse, Galaxy, BioMart 2014
http://rnaspace.org/ RNAspace an integrated environment for non-coding RNA annotation JBrowse 2013
http://www.rosaceae.org Genome Database for Rosaceae Rosaceae species Tripal 2013
http://rulai.cshl.edu/cshlmpd/credit.html CSHLmpd Mammalian Promoter Database 2013
http://www.sanbi.ac.za SANBI T. brucei 2013
http://seacow.helmholtz-muenchen.de/cgi-bin/gb2/gbrowse/Barley_PhysMap/ TriticeaeGenome Barley at MIPS GBrowse 2014
http://services.appliedgenomics.org/projects/drupomics/ Peach Genome Peaches @ Istituto di Genomica Applicata GBrowse 2013
http://sgdlite.princeton.edu/ YFGLite / SGD Lite Yeast Functional Genomics Database GBrowse 2013
http://www.shigen.nig.ac.jp/barley/ BarleyDB Barley! GBrowse, CMap 2013
http://skatebase.org/ SkateBase Skate GBrowse 2013
http://smedgd.neuro.utah.edu/ SmedGD Planaria ESTs Chado 2013
http://solgenomics.net/ Sol Genomics Network Chado 2013
http://soybase.org/ SoyBase USDA Soybean Genetics and Genomics Database GBrowse, Cyc 2013
http://soybeangenome.siu.edu/ Soybean Gbrowse Database GBrowse 2013
http://spbase.org SpBase Genome sequence and annotations produced by the Baylor College of Medicine Human Genome Sequencing Center and the sea urchin research community. GBrowse, BioMart, Textpresso 2013
http://spottedwingflybase.oregonstate.edu/ Spotted Wing FlyBase Drosophila suzukii GBrowse, MAKER (use for annotation) 2013
http://www.spirodelagenome.org/ Spirodela Genome the aquatic plant Spirodela GBrowse 2013
http://t1dbase.org/ T1DBase DB focussed on type 1 diabetes 2013
http://tbrowse.osdd.net/ TBrowse Integrative genomics map of Mycobacterium tuberculosis Chado, GBrowse 2013
http://ted.bti.cornell.edu/epigenome/index.html Tomato Epigenome Database Tomato epigenome (surprise!) GBrowse 2014
http://togogenome.org/ Togo Genome genome database collection provided by the DBCLS JBrowse 2014
http://www.tomatogenome.net/ Tomato Genome 150 Tomato Genome ReSequencing project JBrowse 2013
http://toxodb.org ToxoDB Toxoplasma (part of EupathDB) 2013
http://treetfdb.bmep.riken.jp/index.pl TreeTFDB transcription factors (TF) of papaya (Carica papaya), jatoropha (Jatropha curcas), cassava (Manihot esculenta), poplar (Populus trichocarpa), castor bean (Ricinus communis) and grape vine (Vitis vinifera) 2013
http://trichdb.org TrichDB Trichomonas (part of EupathDB) 2013
http://trifldb.psc.riken.jp/v3/index.pl Triticeae full-length CDS database [5] Brachypodium GBrowse 2013
http://tritrypdb.org TriTrypDB Kinetoplastids (part of EupathDB) 2013
http://tropgenedb.cirad.fr/ TropGENE DB genetic and genomic information about tropical crops studied by Cirad. CMap 2013
https://urgi.versailles.inra.fr/gb2/gbrowse/wheat_phys_pub/ Wheat @ URGI/INRA Wheat chr 1 GBrowse 2013
http://www.vaccinium.org/ Genomic DB for Vaccinium Blueberry, cranberry, lingonberry, other Vaccinium spp. Tripal 2013
http://vectorbase.org VectorBase Invertebrate vectors of human pathogens Chado, DAS, Apollo 2013
http://wfleabase.org/ wFleaBase Daphnia Water Flea Genome Database Chado, BioMart, GBrowse 2013
http://wheat-urgi.versailles.inra.fr/Tools/Triannot-Pipeline/ TriAnnot Pipeline TriAnnot pipeline for automated plant genome annotation GBrowse 2013
http://wheat.pw.usda.gov/ GrainGenes GBrowse, CMap 2013
http://www.wheatgenome.info/ Wheat Genome Wheat 2013
http://wildsoydb.org/ Wild Soy DB Wild (and cultivated) soy bean genomes GBrowse, JBrowse 2013
http://www.wormbase.org WormBase C. elegans 2013
http://www.xenbase.org/ Xenbase Xenopus 2013
http://xmap.ftdna.com/ Xmap Human X chromosome map for SNP and STR markers used in genetic genealogy and anthropology GBrowse 2013
http://yakuba.uchicago.edu/ Drosophila yakuba JBrowse 2013
http://yandell-lab.org/software/cgl/ CGL Comparative Genomics Library 2013
http://yeastgenome.org/ SGD S. cerevisiae resources 2013
http://ymap.ftdna.com/ Ymap Human Y chromosome map for SNP and STR markers used in genetic genealogy and anthropology Gbrowse 2013
http://zfin.org/ ZFIN Zebrafish, Danio rerio GBrowse 2013
http://retrogenedb.amu.edu.pl RetrogeneDb [6] retrocopies JBrowse 2014
http://ngspipelines.toulouse.inra.fr:9019 SeaBass brain and liver transcriptome BioMart; JBrowse 2014
http://sigenae.org Sigenae various agricultural spp BioMart, Galaxy 2014
http://www.bioinformatics.nl/brassica/turnip Wageningen Bioinformatics Webportal Brassica rapa and similar JBrowse, MAKER 2014
http://mtb.dobzhanskycenter.org Genome-wide Mycobacterium tuberculosis variation (GMTV) database [7] Mycobacterium tuberculosis JBrowse 2014
http://www.camelinadb.ca/ Camelina sativa oilseed GBrowse 2014
http://gbrowse.csbio.unc.edu/cgi-bin/gb2/gbrowse/seeqtl/ seeQTL searchable database for human eQTLs GBrowse 2014
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