GMOD Malaysia 2014/Intermine Tutorial

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The Web Interface

This section focusses on the features of the graphical web interface.

All these tasks will look at FlyMine.

Search

The most basic search interface - the "quick-search" allows unstructured access to data in the system. Information is provided about what type of data is returned, to help narrow the search.

Tasks:

  • How many hits are returned for "eve", "alzheimer"?
  • Which fly genes match "alzheimer"?

Templates

Templates provide a more targeted search, which can be more powerful once you know what you are looking for.

Tasks:

  • Find the templates section
  • How many templates are good matches for "protein domain"?
  • Can you find the protein domains for the gene "mad"?
  • Can you find the protein domains for genes expressed in the Fly ovary? How many are there?