Difference between revisions of "GBrowse RPM HOWTO"
(→Authors) |
|||
| Line 3: | Line 3: | ||
=Biopackages= | =Biopackages= | ||
| − | RPM-based Linux distributions, including [http://fedoraproject.org/wiki/ Fedora Core] and [http://www.centos.org CentOS], can install GBrowse using the RPMs located at http://www.biopackages.net/. These can be installed using the [http://en.wikipedia.org/wiki/Yellow_dog_Updater_Modified yum] installer tool. | + | RPM-based Linux distributions, including [http://fedoraproject.org/wiki/ Fedora Core] and [http://www.centos.org CentOS], can install GBrowse using the RPMs located at http://www.biopackages.net/. These can be installed using the [http://en.wikipedia.org/wiki/Yellow_dog_Updater_Modified yum] installer tool. For more information please see the [Biopackages HOWTO]. |
| − | |||
=Preliminaries= | =Preliminaries= | ||
| − | + | See the [Biopackages HOWTO] for the steps to setup Biopackages on your system. | |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
=Installing Packages= | =Installing Packages= | ||
Revision as of 20:30, 23 April 2007
This page or section needs to be edited. Please help by editing this page to add your revisions or additions.
Biopackages
RPM-based Linux distributions, including Fedora Core and CentOS, can install GBrowse using the RPMs located at http://www.biopackages.net/. These can be installed using the yum installer tool. For more information please see the [Biopackages HOWTO].
Preliminaries
See the [Biopackages HOWTO] for the steps to setup Biopackages on your system.
Installing Packages
First, as root, freshen your local cache of yum header files. Yum will print something similar to what is below:
% yum update Gathering header information file(s) from server(s) Server: Fedora Core 2 - x86_64 - Base Server: BioPackages (Stable x86_64) for Fedora Core 2 - x86_64 Server: BioPackages (Stable noarch) for Fedora Core 2 - x86_64 Server: Fedora Core 2 - x86_64 - Released Updates Finding updated packages Downloading needed headers genome-Sce-annotation-gen 100% |=========================| 1.1 kB 00:00 genome-Sce-nib-0-S228C-3. 100% |=========================| 1.7 kB 00:00 chado-Sce-0-S228C.0.003-2 100% |=========================| 2.0 kB 00:00 genome-Sce-annotation-aff 100% |=========================| 1.2 kB 00:00 genome-Sce-0-S228C-3.2005 100% |=========================| 1.7 kB 00:00
Then install gbrowse:
% yum install gbrowse
You can now visit the documentation and try out the example Yeast database by visiting http://localhost/gbrowse
Authors
Lincoln Stein 12:51, 17 April 2007 (EDT)
Some material cut and paste from www.biopackages.net, with permission from Allen Day.
Brian O'Connor 12:12, 19 April 2007 (PDT)
Updated the install description of Biopackages to use our new configuration RPMs.
