This is the test server for the new GMOD.org server. Please be aware that changes to pages here might get lost.

DBStag

From GMOD
Revision as of 23:10, 15 September 2009 by Clements (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

DBStag is a generic SQL to XML mapping tool

Download

Use

Loading data

The most common use in the context of Chado is to load Chado XML. No configuration is necessary, just install and run

 stag-storenode.pl -d Pg:mychadoinst@myserver gene_ontology.chado

Querying

A secondary use is a means of data retrieval. DBStag can be used to query Chado using multi-table joins with the results automatically nested.

Chado comes with some templates that can be used with Stag.

Example:

 selectall_xml.pl -d Pg:mychadoinst@myserver /chado-cvterm dbname=GO accession=0008150