Difference between revisions of "Canto"

Revision as of 18:53, 2 December 2013

Status

• Mature release
• Development: active
• Support: active

Licence

GPL 3.0

Resources

• Home page

• Download

• Demo server

Interoperable Components

• • Chado

About Canto

Canto is an online tool that supports functional gene annotation by community researchers as well as by professional curators. It provides a simple interface to gather genetic and molecular data from publications for inclusion in public biological databases. Canto employs OBO ontologies to ensure a consistent vocabulary is used to describe gene and gene product functionality and location.

Genetic and physical interaction annotation is also supported. Canto captures all necessary information about each interaction for submission to BioGRID.

Canto currently supports annotation export in JSON format, either by individual paper or in bulk. The JSON data from Canto can be loaded into a relational database using the Chado schema (as at PomBase) or alternative schemas.

Visit the Canto website.

Downloads

• Download Canto.

Using Canto

Installation

Full instructions for installing Canto are available from the Canto github respository.

Documentation

Instructions for using Canto are integrated into the tool installations and at the PomBase Canto site.

Contacts and Mailing Lists

Canto in the wild

• Generic Gene Ontology Canto

  Curate GO annotations for proteins using UniProtKB identifiers

• PomBase Canto

  Curate GO annotations for S. pombe

Canto Development

Development team

Canto is developed as part of the PomBase project, which provides a model organism database for the fission yeast Schizosaccharomyces pombe. PomBase is funded by the Wellcome Trust and is run by a consortium comprising the University of Cambridge, the European Bioinformatics Institute and University College London.

More on Canto

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