CMap

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Description

CMap is a web-based tool that allows users to view comparisons of genetic and physical maps. The package also includes tools for curating map data.


Requirements

  • Perl 5.6.0 or higher
  • A web server with CGI capabilites (e.g., Apache 1.x or 2.x)
  • A relational database, e.g. MySQL (4.0+), Sybase Adaptive Server Enterprise, PostgreSQL, SQLite or Oracle (9.x)
  • libgd 2.0.28 and GD.pm 2.15
  • Various Perl modules available on CPAN


Documentation

Also see the CMap FAQ.

Downloads

From SourceForge.


Demo & Screenshots

See the Gramene Project for a production version.


Screenshots

Here are some sample maps from the Gramene Project.


Cmap sample1.jpg


Cmap sample1t.jpg


Cmap sample2.jpg


Cmap sample2t.jpg


Cmap sample3.jpg


Cmap sample3t.jpg


Sites Using CMap

  • Gramene: Comparative mapping resource for grasses (plant)
  • NCGR's Legume Information System: A publicly accessible legume resource that will integrate genetic and molecular data from multiple legume species and enable cross-species comparisons
  • BeeBase: The honey bee genome database
  • BASC: Brassica database


Code


Patches


Mailing List

  • gmod-cmap@lists.sourceforge.net: Discussion of development, installation problems, etc.
  • gmod-cmap-commits@lists.sourceforge.net: Notification of CVS activity
  • Subscribe
  • Archives


Contact