Difference between revisions of "CMap"

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m (Contact: Merging Synteny Category with Comparative Genomics.)
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* See the [http://sourceforge.net/tracker/?group_id=27707&atid=391293 SourceForge Patch List].
 
* See the [http://sourceforge.net/tracker/?group_id=27707&atid=391293 SourceForge Patch List].
 
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* 1.0: Patched schema creation file for Postgres: [http://gmod.cvs.sourceforge.net/*checkout*/gmod/cmap/sql/cmap.create.postgresql cmap.create.postgresql].
  
 
==Mailing List==
 
==Mailing List==

Revision as of 17:37, 22 April 2008

CMap is a web-based tool that allows users to view comparisons of genetic and physical maps. The package also includes tools for curating map data.

Requirements

  • Perl 5.6.0 or higher
  • A web server with CGI capabilites (e.g., Apache 1.x or 2.x)
  • A relational database, e.g. MySQL (4.0+), Sybase Adaptive Server Enterprise, PostgreSQL, SQLite or Oracle (9.x)
  • libgd 2.0.28 and GD.pm 2.15
  • Various Perl modules available on CPAN


Documentation

Also see the CMap FAQ.

Presentations

Downloads

From SourceForge.


Demo & Screenshots

See the Gramene Project for a production version.


Screenshots

Here are some sample maps from the Gramene Project.


Cmap sample1.jpg


Cmap sample1t.jpg


Cmap sample2.jpg


Cmap sample2t.jpg


Cmap sample3.jpg


Cmap sample3t.jpg


Sites Using CMap

The following is a partial list of groups using CMap.

Code

Patches

Mailing List

  • gmod-cmap@lists.sourceforge.net: Discussion of development, installation problems, etc.
  • gmod-cmap-commits@lists.sourceforge.net: Notification of CVS activity
  • Subscribe to gmod-cmap
  • gmod-cmap archives

Contact