Difference between revisions of "CMap"

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===Screenshots===
 
===Screenshots===
  
Here are some sample maps from the [http://www.gramene.org/ Gramene Project].
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Here are some sample maps from the [http://www.gramene.org/ Gramene Project].  See also [http://www.gramene.org/cmap/entry.html other Gramene views].
  
  
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[[Image:Cmap_sample3t.jpg]]
 
[[Image:Cmap_sample3t.jpg]]
 
  
 
==Sites Using CMap==
 
==Sites Using CMap==

Revision as of 21:24, 15 December 2010

http://gmod.org/wiki/CMap#Logo}}

CMap is a web-based tool that allows users to view comparisons of genetic and physical maps. The package also includes tools for curating map data.


Requirements

  • Perl 5.6.0 or higher
  • A web server with CGI capabilites (e.g., Apache 1.x or 2.x)
  • A relational database, e.g. MySQL (4.0+), Sybase Adaptive Server Enterprise, PostgreSQL, SQLite or Oracle (9.x)
  • libgd 2.0.28 and GD.pm 2.15
  • Various Perl modules available on CPAN


Documentation

Also see the CMap FAQ.

Presentations

Downloads

From SourceForge.


Demo & Screenshots

See the Gramene Project for a production version.


Screenshots

Here are some sample maps from the Gramene Project. See also other Gramene views.


Cmap sample1.jpg


Cmap sample1t.jpg


Cmap sample2.jpg


Cmap sample2t.jpg


Cmap sample3.jpg


Cmap sample3t.jpg

Sites Using CMap

The following is a partial list of groups using CMap.

Code

Patches

  • See the SourceForge Patch List.
  • 1.0: Patched schema creation file for Postgres: {{SF_SVN|/cmap/trunk/sql/cmap.create.postgresql cmap.create.postgresql].

Mailing Lists

Mailing List Link Description Archive(s)
CMap gmod-cmap Discussion of CMap development, installation problems, etc. Nabble (2010/05+), Sourceforge
gmod-cmap-commits Notification of SVN activity for CMap. Sourceforge

Contact


Citation

CMap 1.01: a comparative mapping application for the Internet.

Ken Youens-Clark, Ben Faga, Immanuel V. Yap, Lincoln Stein and Doreen Ware, Bioinformatics 2009 25(22):3040-3042; doi:10.1093/bioinformatics/btp458.


The CMap logo was created by Kathy Bracken, a participant in the Spring 2010 Logo Program, while a design student at Linn-Benton Community College.

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