Difference between revisions of "BioMart"
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| − | BioMart is a robust, query-oriented data integration system, based on distributed data warehousing ideas. The system can be applied to a single or multiple databases. It supports scalable large scale querying of individual databases as well as query-chaining between them. All datasources in the system comply with the BioMart data model - a simple, query optimised database schema. The system consists of database schema specification, administration tools for deploying and configuring mart-spec databases and data access software, which includes web and standalone interfaces. | + | [http://www.biomart.org/ BioMart] is a robust, query-oriented data integration system, based on distributed data warehousing ideas. The system can be applied to a single or multiple databases. It supports scalable large scale querying of individual databases as well as query-chaining between them. All datasources in the system comply with the BioMart data model - a simple, query optimised database schema. The system consists of database schema specification, administration tools for deploying and configuring mart-spec databases and data access software, which includes web and standalone interfaces. |
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* [[:Image:Jan2009BioMart.pdf|BioMart]], by Arek Kasprzyk at the [[January 2009 GMOD Meeting#BioMart|January 2009 GMOD Meeting]]. | * [[:Image:Jan2009BioMart.pdf|BioMart]], by Arek Kasprzyk at the [[January 2009 GMOD Meeting#BioMart|January 2009 GMOD Meeting]]. | ||
| − | * [[:Image:Kasprzyk-050516.ppt|BioMart and Chado]], by Arek Kasprzyk at [[May 2005 GMOD Meeting]]. | + | * [[:Image:Kasprzyk-050516.ppt|BioMart and Chado]], by Arek Kasprzyk at [[May 2005 GMOD Meeting]]. |
* [[:Image:Kasprzyk_040526.ppt|BioMart: A Federated Query Architecture]], by Arek Kasprzyk at the [[April 2004 GMOD Meeting]]. | * [[:Image:Kasprzyk_040526.ppt|BioMart: A Federated Query Architecture]], by Arek Kasprzyk at the [[April 2004 GMOD Meeting]]. | ||
Revision as of 18:01, 26 June 2009
__NOTITLE__
Learn about BioMart at
{{#icon: ISMBECCB2009_logo.png|ISMB ECCB 2009|140|http://www.iscb.org/ismbeccb2009/poster_list.php?cat=E}}
30 June
There is a session
on BioMart at
BioMart is a robust, query-oriented data integration system, based on distributed data warehousing ideas. The system can be applied to a single or multiple databases. It supports scalable large scale querying of individual databases as well as query-chaining between them. All datasources in the system comply with the BioMart data model - a simple, query optimised database schema. The system consists of database schema specification, administration tools for deploying and configuring mart-spec databases and data access software, which includes web and standalone interfaces.
Contents
Demo & Screenshots
The BioMart web interface at EBI can be found here. For Ensembl implemetation look here. The screenshots of standalone interfaces and admin tools can be found here
Requirements
The requirements will differ dependent on which part of the BioMart suite you want to install. For more details look http://www.biomart.org/install-overview.html
Documentation
http://www.biomart.org/install.html
Presentations
- BioMart, by Arek Kasprzyk at the January 2009 GMOD Meeting.
- BioMart and Chado, by Arek Kasprzyk at May 2005 GMOD Meeting.
- BioMart: A Federated Query Architecture, by Arek Kasprzyk at the April 2004 GMOD Meeting.
Contact
http://www.biomart.org/contact.html
Downloads
The download/installation instructions can be found http://www.biomart.org/install-overview.html
