Difference between revisions of "BioMart"

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(New page: ; '''Description'''<br /> : BioMart is a robust, query-oriented data integration system, based on distributed data warehousing ideas. The system can be applied to a single or multiple da...)
 
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{{Tool data
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|name=BioMart
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|status=mature
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|dev=active
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|support=active
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|type=Community Annotation, Database schema, Database tools, Genome Annotation, Middleware, Tool Integration, Data federation software
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|platform=linux, unix, os x, windows, web
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|about=BioMart is a freely available, open source, federated database system that provides unified access to disparate, geographically distributed data sources. It is designed to be data agnostic and platform independent, such that existing databases can easily be incorporated into the BioMart framework.
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|open source=Yes
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|licence=[http://opensource.org/licenses/LGPL-3.0 LGPL]
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|input=Any data that can be stored in the relational database
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|output=APIs: REST/SOAP, JAVA, SPARQL
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|release date=2001/01/01
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|logo=Biomart250.png
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|papers=http://www.biomart.org/publications.html
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|dl tracking=We do not track downloads but the usage can be also tracked through http://www.biomart.org/community.html
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|gmod date=
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|survey link=
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|contact email=arek.kasprzyk@gmail.com
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|dev status=
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}}
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All BioMart documentation has now been moved to the [http://www.biomart.org/ BioMart website].
  
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[[File:Biomart250.png|center|link=http://www.biomart.org/|BioMart]]
  
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; '''Description'''<br />
 
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: BioMart is a robust, query-oriented data integration system, based on distributed data warehousing ideas. The system can be applied to a single or multiple databases. It supports scalable large scale querying of individual databases as well as query-chaining between them. All datasources in the system comply with the BioMart data model - a simple, query optimised database schema. The system consists of database schema specification, administration tools for deploying and configuring mart-spec databases and data access software, which includes web and standalone interfaces. The BioMart suite is still under developement.
 
  
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; '''Demo &amp; Screenshots'''<br />
 
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: The BioMart web interface at EBI can be found [http://www.ebi.ac.uk/biomart/martview here]. For Ensembl implemetation look [http://www.ensembl.org/Multi/martview here]. The screenshots of standalone interfaces and admin tools can be found [http://www.ebi.ac.uk/biomart/system.html here]
 
  
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; '''Requirements'''<br />
 
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: The requirements will differ dependent on which part of the BioMart suite you want to install. For more details look [http://www.ebi.ac.uk/biomart/install.html here]
 
  
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; '''Documentation'''<br />
 
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: The project documentation is still scanty but for pointers go to [http://www.ebi.ac.uk/biomart BioMart home]
 
  
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; '''Contact'''<br />
 
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: The contact details can be found [http://www.ebi.ac.uk/biomart/contact.html here].
 
  
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; '''Downloads'''<br />
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[[Category:BioMart]]
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: The download/installation instructions can be found [http://www.ebi.ac.uk/biomart/install.html here]
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[[Category:Database Tools]]
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[[Category:GMOD Components]]
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{{SemanticLink
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|linkurl=http://www.biomart.org/download.html
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|linktype=download
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}}
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{{SemanticLink
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|linkurl=http://www.biomart.org/
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|linktype=website
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}}
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{{SemanticLink
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|linkurl=http://www.biomart.org/community.html
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|linktitle=BioMart user community
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|linktype=wild URL
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|linkdesc=Links to BioMart installations in the wild
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}}
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{{InteroperableComponent
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|relationship=provides data for
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|object=GBrowse
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}}

Latest revision as of 22:26, 15 October 2013

All BioMart documentation has now been moved to the BioMart website.

BioMart
Retrieved from "http://gmod.org/mediawiki/index.php?title=BioMart&oldid=24712"
Facts about "BioMart"RDF feed
Available on platformlinux +, unix +, os x +, windows + and web +
Has URLhttp://www.biomart.org/download.html +, http://www.biomart.org/ + and http://www.biomart.org/community.html +
Has descriptionBioMart is a freely available, open source … BioMart is a freely available, open source, federated database system that provides unified access to disparate, geographically distributed data sources. It is designed to be data agnostic and platform independent, such that existing databases can easily be incorporated into the BioMart framework.e incorporated into the BioMart framework. + and Links to BioMart installations in the wild +
Has development statusactive +
Has input formatAny data that can be stored in the relational database +
Has licenceLGPL +
Has logoBiomart250.png +
Has output formatAPIs: REST/SOAP +, JAVA + and SPARQL +
Has software maturity statusmature +
Has support statusactive +
Has titleBioMart user community +
Has topicBioMart +
Interaction typeprovides data for +
InteractorBioMart +
Interacts withGBrowse +
Is open sourceYes +
Link typedownload +, website + and wild URL +
Release date1 January 2001 +
Tool functionality or classificationCommunity Annotation +, Database schema +, Database tools +, Genome Annotation +, Middleware +, Tool Integration + and Data federation software +
Has subobjectThis property is a special property in this wiki.BioMart#http://www.biomart.org/download.html +, BioMart#http://www.biomart.org/ +, BioMart#http://www.biomart.org/community.html + and BioMart +