Difference between revisions of "BioMart"

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<center>{{#icon: Biomart250.png|BioMart||http://www.biomart.org/}}</center>
 
<center>{{#icon: Biomart250.png|BioMart||http://www.biomart.org/}}</center>
 
 
{{ComponentBox|{{BioMartResourcesBoxItem}}|||||}}
 
 
[http://www.biomart.org/ BioMart] is a robust, query-oriented data integration system, based on distributed data warehousing ideas. The system can be applied to a single or multiple databases. It supports scalable large scale querying of individual databases as well as query-chaining between them. All datasources in the system comply with the BioMart data model - a simple, query optimised database schema. The system consists of database schema specification, administration tools for deploying and configuring mart-spec databases and data access software, which includes web and standalone interfaces.
 
 
 
==Demo & Screenshots==
 
 
The BioMart web interface at OICR can be found [http://www.biomart.org/biomart/martview here]. For Ensembl implemetation look [http://www.ensembl.org/biomart/martview here]. The screenshots of standalone interfaces and admin tools can be found [http://www.biomart.org/user-docs.pdf here]
 
 
 
==Requirements==
 
 
The requirements will differ dependent on which part of the BioMart suite you want to install. For more details look http://www.biomart.org/install-overview.html
 
 
 
==Documentation==
 
 
* [http://www.biomart.org/install.html BioMart Documentation]
 
* [[BioMart Tutorial]]
 
 
=== How to Load a [[Chado]] Database into BioMart ===
 
 
{{ImageRight|Urgi.png|INRA URGI|105|http://urgi.versailles.inra.fr/}}
 
A [[:Image:How to load chado to biomart.pdf|detailed document]] (available in both [[Media:How to load chado to biomart.pdf|PDF]] and [[Media:How to load chado to biomart.doc|Microsoft Word]] formats) on how to load a [[Chado]] database into BioMart has been written by Aminah Olivia KELIET, Joëlle Amselem, Sandra DEROZIE, and Delphine Steinbach, all of [http://www.urgi.versailles.inra.fr INRA URGI].  This document contains step by step instructions on how to load data from a Chado database into BioMart.  Contact Aminah Olivia KELIET <[mailto:aminah-olivia.keliet@versailles.inra.fr aminah-olivia.keliet@versailles.inra.fr]> if you have specific questions.
 
 
''Note: the eventual plan is to wikify this document.''
 
 
=== Presentations ===
 
 
* [[:Image:Jan2009BioMart.pdf|BioMart]], by Arek Kasprzyk at the [[January 2009 GMOD Meeting#BioMart|January 2009 GMOD Meeting]].
 
* [[:Image:Kasprzyk-050516.ppt‎|BioMart and Chado]], by Arek Kasprzyk at [[May 2005 GMOD Meeting]].
 
* [[:Image:Kasprzyk_040526.ppt‎|BioMart: A Federated Query Architecture]], by Arek Kasprzyk at the [[April 2004 GMOD Meeting]].
 
 
== Mailing Lists ==
 
 
{{MailingListsFor|BioMart}}
 
 
==Downloads==
 
 
The download/installation instructions can be found http://www.biomart.org/install-overview.html
 
  
 
[[Category:BioMart]]
 
[[Category:BioMart]]
 
[[Category:Database Tools]]
 
[[Category:Database Tools]]
 
[[Category:GMOD Components]]
 
[[Category:GMOD Components]]

Revision as of 15:10, 22 June 2012

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{{#icon: Biomart250.png|BioMart||http://www.biomart.org/}}