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| <center>{{#icon: Biomart250.png|BioMart||http://www.biomart.org/}}</center> | | <center>{{#icon: Biomart250.png|BioMart||http://www.biomart.org/}}</center> |
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− | [http://www.biomart.org/ BioMart] is a robust, query-oriented data integration system, based on distributed data warehousing ideas. The system can be applied to a single or multiple databases. It supports scalable large scale querying of individual databases as well as query-chaining between them. All datasources in the system comply with the BioMart data model - a simple, query optimised database schema. The system consists of database schema specification, administration tools for deploying and configuring mart-spec databases and data access software, which includes web and standalone interfaces.
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− | ==Demo & Screenshots==
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− | The BioMart web interface at OICR can be found [http://www.biomart.org/biomart/martview here]. For Ensembl implemetation look [http://www.ensembl.org/biomart/martview here]. The screenshots of standalone interfaces and admin tools can be found [http://www.biomart.org/user-docs.pdf here]
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− | ==Requirements==
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− | The requirements will differ dependent on which part of the BioMart suite you want to install. For more details look http://www.biomart.org/install-overview.html
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− | ==Documentation==
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− | * [http://www.biomart.org/install.html BioMart Documentation]
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− | * [[BioMart Tutorial]]
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− | === How to Load a [[Chado]] Database into BioMart ===
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− | {{ImageRight|Urgi.png|INRA URGI|105|http://urgi.versailles.inra.fr/}}
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− | A [[:Image:How to load chado to biomart.pdf|detailed document]] (available in both [[Media:How to load chado to biomart.pdf|PDF]] and [[Media:How to load chado to biomart.doc|Microsoft Word]] formats) on how to load a [[Chado]] database into BioMart has been written by Aminah Olivia KELIET, Joëlle Amselem, Sandra DEROZIE, and Delphine Steinbach, all of [http://www.urgi.versailles.inra.fr INRA URGI]. This document contains step by step instructions on how to load data from a Chado database into BioMart. Contact Aminah Olivia KELIET <[mailto:aminah-olivia.keliet@versailles.inra.fr aminah-olivia.keliet@versailles.inra.fr]> if you have specific questions.
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− | ''Note: the eventual plan is to wikify this document.''
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− | === Presentations ===
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− | * [[:Image:Jan2009BioMart.pdf|BioMart]], by Arek Kasprzyk at the [[January 2009 GMOD Meeting#BioMart|January 2009 GMOD Meeting]].
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− | * [[:Image:Kasprzyk-050516.ppt|BioMart and Chado]], by Arek Kasprzyk at [[May 2005 GMOD Meeting]].
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− | * [[:Image:Kasprzyk_040526.ppt|BioMart: A Federated Query Architecture]], by Arek Kasprzyk at the [[April 2004 GMOD Meeting]].
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− | == Mailing Lists ==
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− | {{MailingListsFor|BioMart}}
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− | ==Downloads==
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− | The download/installation instructions can be found http://www.biomart.org/install-overview.html
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| [[Category:BioMart]] | | [[Category:BioMart]] |
| [[Category:Database Tools]] | | [[Category:Database Tools]] |
| [[Category:GMOD Components]] | | [[Category:GMOD Components]] |