Difference between revisions of "BioMart"

From GMOD
Jump to: navigation, search
m
Line 3: Line 3:
  
  
{{ComponentBox|{{BioMartResourcesBoxItem}}||||}}
+
{{ComponentBox|{{BioMartResourcesBoxItem}}|{{ComponentBoxEventsHeader}}|{{GMODOctober2011BoxItem}}||||}}
  
 
[http://www.biomart.org/ BioMart] is a robust, query-oriented data integration system, based on distributed data warehousing ideas. The system can be applied to a single or multiple databases. It supports scalable large scale querying of individual databases as well as query-chaining between them. All datasources in the system comply with the BioMart data model - a simple, query optimised database schema. The system consists of database schema specification, administration tools for deploying and configuring mart-spec databases and data access software, which includes web and standalone interfaces.
 
[http://www.biomart.org/ BioMart] is a robust, query-oriented data integration system, based on distributed data warehousing ideas. The system can be applied to a single or multiple databases. It supports scalable large scale querying of individual databases as well as query-chaining between them. All datasources in the system comply with the BioMart data model - a simple, query optimised database schema. The system consists of database schema specification, administration tools for deploying and configuring mart-spec databases and data access software, which includes web and standalone interfaces.

Revision as of 21:01, 14 September 2011

__NOTITLE__

{{#icon: Biomart250.png|BioMart||http://www.biomart.org/}}


BioMart is a robust, query-oriented data integration system, based on distributed data warehousing ideas. The system can be applied to a single or multiple databases. It supports scalable large scale querying of individual databases as well as query-chaining between them. All datasources in the system comply with the BioMart data model - a simple, query optimised database schema. The system consists of database schema specification, administration tools for deploying and configuring mart-spec databases and data access software, which includes web and standalone interfaces.


Demo & Screenshots

The BioMart web interface at OICR can be found here. For Ensembl implemetation look here. The screenshots of standalone interfaces and admin tools can be found here


Requirements

The requirements will differ dependent on which part of the BioMart suite you want to install. For more details look http://www.biomart.org/install-overview.html


Documentation

How to Load a Chado Database into BioMart

INRA URGI

A detailed document (available in both PDF and Microsoft Word formats) on how to load a Chado database into BioMart has been written by Aminah Olivia KELIET, Joëlle Amselem, Sandra DEROZIE, and Delphine Steinbach, all of INRA URGI. This document contains step by step instructions on how to load data from a Chado database into BioMart. Contact Aminah Olivia KELIET <aminah-olivia.keliet@versailles.inra.fr> if you have specific questions.

Note: the eventual plan is to wikify this document.

Presentations

Mailing Lists

Mailing List Link Description Archive(s)
BioMart announce BioMart announcements mailing list Nabble (2010/06+)
users BioMart users, developers, code and installation Nabble (2010/06+)

Downloads

The download/installation instructions can be found http://www.biomart.org/install-overview.html