Difference between revisions of "BA2009"

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The workshop will introduce the [[Main Page|GMOD project]] and many project [[GMOD Components|components]].  The workshop will be run by [[User:Clements|Dave Clements]] of the [[GMOD Help Desk]].
 
The workshop will introduce the [[Main Page|GMOD project]] and many project [[GMOD Components|components]].  The workshop will be run by [[User:Clements|Dave Clements]] of the [[GMOD Help Desk]].
  
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== Links ==
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; Presentation - Database Tools for Biologists ([ftp://ftp.gmod.org/pub/gmod/Meetings/2009/BA/BA2009GMODWorkshop.pdf PDF], [ftp://ftp.gmod.org/pub/gmod/Meetings/2009/BA/BA2009GMODWorkshop.ppt PowerPoint])
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: The presentation slides are available in two formats. The PowerPoint contains a few useful animations.
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; [[GBrowse NGS Tutorial]]
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: The worked example demonstrating how to display [[next generation sequencing]] (NGS) data in [[GBrowse]] is now available as a GMOD [[:Category:Tutorials|tutorial]], complete with a starting [[VMware]] image.
  
 
== Agenda  ==
 
== Agenda  ==
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| style="font-size: 120%" | '''GMOD Project and Community'''
 
| style="font-size: 120%" | '''GMOD Project and Community'''
 
|}
 
|}
 
 
== Links ==
 
 
; Presentation - Database Tools for Biologists ([ftp://ftp.gmod.org/pub/gmod/Meetings/2009/BA/BA2009GMODWorkshop.pdf PDF], [ftp://ftp.gmod.org/pub/gmod/Meetings/2009/BA/BA2009GMODWorkshop.ppt PowerPoint])
 
: The presentation slides are available in two formats. The PowerPoint contains a few useful animations.
 
; [[GBrowse NGS Tutorial]]
 
: The worked example demonstrating how to display [[next generation sequencing]] (NGS) data in [[GBrowse]] is now available as a GMOD [[:Category:Tutorials|tutorial]], complete with a starting [[VMware]] image.
 
  
 
== Sponsor ==
 
== Sponsor ==

Revision as of 20:50, 3 November 2009

__NOTITLE__

Bioinformatics Australia 2009|450|http://www.ausbiotech2009.com.au/bia/bia-home}}

Pre-Conference GMOD Workshop
28 October 2009, 2:00-6:00pm


There will be a half day, pre-conference GMOD workshop at Bioinformatics Australia 2009 (BA2009) in Melbourne. The workshop will be held Wednesday 28 October 2009, from 2-6pm.

The workshop will introduce the GMOD project and many project components. The workshop will be run by Dave Clements of the GMOD Help Desk.


Links

Presentation - Database Tools for Biologists (PDF, PowerPoint)
The presentation slides are available in two formats. The PowerPoint contains a few useful animations.
GBrowse NGS Tutorial
The worked example demonstrating how to display next generation sequencing (NGS) data in GBrowse is now available as a GMOD tutorial, complete with a starting VMware image.

Agenda

Time Topic
2:00 Introduction
2:10 Software
2:15 Visualisation

GBrowse, JBrowse, GBrowse_syn, CMap, other Comparative Genomics viewers
This will include a detailed GBrowse configuration example, including showing some next generation sequence data.

3:55 Break
4:05 Data Management

Chado, BioMart, InterMine, GFF3

4:50 Annotation

MAKER, DIYA, Apollo, Textpresso, Community Annotation, Pipelines and Workflows

5:35 GMOD Project and Community

http://www.bioplatforms.com/

This workshop is generously sponsored by Bioplatforms Australia, and admission to the workshop is included in the registration for Bioinformatics Australia 2009.

About Bioplatforms Australia

Bioplatforms Australia is a national body that supports Australian life science research through major investments in state-of-the-art platform technologies and by providing specialist services in genomics, proteomics, metabolomics and bioinformatics. Bioplatforms Australia represents an Australia-wide network of universities and research institutions that boast the nation’s best in biomolecular research capabilities. Its vision is to promote broad access to its infrastructure network and cutting edge expertise as well as enhance research efforts by offering an integrated 'omics' approach.

Flier

Media:BA2009AdRevised.pdf

If you work in Australia (or anywhere close to it!) please help spread the word on this workshop by downloading, printing and posting the workshop announcement at your workplace.