Difference between revisions of "Artemis"
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Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame | Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame | ||
| − | translation. Artemis is written in Java, and is available for UNIX, Macintosh and Windows systems. It can read [http://www.ebi.ac.uk/embl/index.html EMBL] and | + | translation. Artemis is written in Java, and is available for UNIX, Macintosh and Windows systems. It can read [http://www.ebi.ac.uk/embl/index.html EMBL] and |
[http://www.ncbi.nlm.nih.gov:80/Genbank/GenbankOverview.html GENBANK] database entries or sequence in [[Glossary#FASTA|FASTA]] or raw format. Extra sequence features can be in EMBL, GENBANK or [[GFF]] format. | [http://www.ncbi.nlm.nih.gov:80/Genbank/GenbankOverview.html GENBANK] database entries or sequence in [[Glossary#FASTA|FASTA]] or raw format. Extra sequence features can be in EMBL, GENBANK or [[GFF]] format. | ||
</div> | </div> | ||
| − | Artemis is not part of the GMOD project, but Artemis does work with [[Chado]] (see the [[Artemis-Chado Integration Tutorial]]), and the Artemis group is working closely with [[Apollo]] developers on [[Gbol]]. | + | Artemis is not part of the GMOD project, but Artemis does work with [[Chado]] (see the [[Artemis-Chado Integration Tutorial]]), and the Artemis group is working closely with [[Apollo]] developers on [[Gbol]]. [[Apollo]] is GMOD's official genome [[annotation]] editor. |
[[Category:Annotation]] | [[Category:Annotation]] | ||
[[Category:External]] | [[Category:External]] | ||
Revision as of 19:09, 25 September 2009
__NOTITLE__ From the Artemis home page:
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation. Artemis is written in Java, and is available for UNIX, Macintosh and Windows systems. It can read EMBL and GENBANK database entries or sequence in FASTA or raw format. Extra sequence features can be in EMBL, GENBANK or GFF format.
Artemis is not part of the GMOD project, but Artemis does work with Chado (see the Artemis-Chado Integration Tutorial), and the Artemis group is working closely with Apollo developers on Gbol. Apollo is GMOD's official genome annotation editor.
