Difference between revisions of "Apollo/tool data"
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− | <noinclude>This page stores the data that populates the [[Apollo]] wiki page. | + | <noinclude>This page stores the data that populates the [[Apollo]] wiki page.</noinclude> |
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{{ {{{template}}} | {{ {{{template}}} | ||
| name = Apollo | | name = Apollo |
Revision as of 02:13, 27 November 2012
This page stores the data that populates the Apollo wiki page. {{ {{{template}}} | name = Apollo | full_name = | status = Mature release | dev = development inactive | os = mac, win, linux, unix | logo = ApolloLogo.png | home = http://apollo.berkeleybop.org/ | about = Apollo is a GUI [graphical user interface]-based tool for editing genome annotations. Like GBrowse, Apollo allows users to scroll and zoom in on areas of interest in a sequence; authorized users can edit annotations and write the changes back to the underlying database. Apollo can run off GFF3 or a Chado database, and it can also integrate with remote services, such as BLAST and Primer BLAST analyses. Apollo is a standalone Java application. | screenshot = | public_server = | dl = Apollo executables for several platforms (Windows, Mac OS X, Linux, Solaris and generic Unix) are available from the Apollo web site. | dl_url = http://apollo.berkeleybop.org/current/install.html | dl_src = The Apollo source code (only needed if you plan to modify Apollo) is available from SourceForge via SVN. | dl_src_url = https://sourceforge.net/projects/gmod/files/Apollo/ | dl_dev = | dl_dev_url = | getting_started_preamble = A comprehensive guide to installing and using Apollo is available from the Apollo user guide. | req = Apollo requires JDK 1.5 or higher. | install = Installation instructions are available from the Apollo website. | config = | doc = * Apollo Javadocs | papers = * Apollo: a community resource for genome annotation editing. PMID:19439563 [1]
| presentations = * Community Annotation at ParameciumDB - Linda Sperling's presentation on ParameciumDB's Community Annotation process at the November 2007 GMOD Meeting.
- Progress Report - from May 2005 GMOD Meeting
- Future Plans - from April 2004 GMOD Meeting
- Progress Report - from September 2003 GMOD Meeting
- Progress Report - from May 2003 GMOD Meeting
| tutorials = ; Apollo Tutorial
- The Apollo session from the 2009 GMOD Summer Schools.
- Apollo tutorials at the Dynamic Gene web site.
- Flash based tutorials on how to use Apollo, using rice as an example. Sections of particular interest are
- Annotation - how to use Apollo
- Resources - how to download sample data and install Apollo on an MS Windows system.
| wild_urls = | mail =
Mailing List Link | Description | Archive(s) | |
---|---|---|---|
Apollo and WebApollo | apollo | Apollo and WebApollo mailing list | Gmane (2008/04-2010/10), Nabble (2010/05+) |
gmod-apollo-cmts | Apollo and WebApollo code updates. |
Please submit bug reports to the Apollo bug tracker at Sourceforge. | logo_info = The Apollo logo was created by Audra Radke, a participant in the Spring 2010 Logo Program, while a design student at Linn-Benton Community College.
| dev_ppl = | dev_status = Active development of Apollo has ceased; the focus has shifted to WebApollo, a web-based version of the tool.
| contact_email =
| formats =
| see_also =
| demo_server =
| survey_link = Apollo
}}
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