Difference between revisions of "2013 GMOD Summer School"
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− | [[File:2013-summer-school.png|right| | + | [[File:2013-summer-school.png|right|300px|2013 GMOD Summer School]] |
− | Dates: Friday July 19th - Tuesday July 23rd | + | Dates: Friday July 19th - Tuesday July 23rd 2013 |
Venue: [http://nescent.org NESCent, North Carolina] | Venue: [http://nescent.org NESCent, North Carolina] | ||
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− | + | <!-- The GMOD Summer School is a five-day course that covers the installation, configuration, and use of a number of widely-used GMOD components, including [[GBrowse]], [[Galaxy]], [[JBrowse]], [[MAKER]], [[Tripal]], [[WebApollo]], and the [[Chado|Chado database schema]]. The sessions are taught by developers of the tools, so they can give expert insight into any problems encountered. Applications are competitive, since we generally receive many more applications that we have slots. | |
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+ | If you have any questions, please contact the [mailto:help@gmod.org GMOD help desk]. | ||
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+ | Applications have now closed for the GMOD Summer School.--> | ||
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+ | [http://gmodsummerschool2013.wikispaces.com/ GMOD 2013 Summer School wiki] (contents available to course participants only) | ||
==The Course== | ==The Course== | ||
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The course covers the following topics in detail: | The course covers the following topics in detail: | ||
{| class="wikitable" | {| class="wikitable" | ||
+ | ! Time slot | ||
! Topic | ! Topic | ||
! Instructor | ! Instructor | ||
! Affiliation; GMOD role | ! Affiliation; GMOD role | ||
|- | |- | ||
− | | [[Cloud|GMOD in the Cloud]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] | + | | Day 1, AM || [[Cloud|GMOD in the Cloud]], [[AWS walkthrough]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] |
|- | |- | ||
− | | [[Chado]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] | + | | Day 2, AM || [[Chado Tutorial 2013|Chado Tutorial]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] |
|- | |- | ||
− | | [[Galaxy]] || [[User:Clements|Dave Clements]] || [http://galaxyproject.org/ Galaxy Project], [http://emory.edu/ Emory University]<br>[[Galaxy]] | + | | Day 5, AM || [[Galaxy Tutorial 2013|Galaxy Tutorial]] || [[User:Clements|Dave Clements]] || [http://galaxyproject.org/ Galaxy Project], [http://emory.edu/ Emory University]<br>[[Galaxy]] |
|- | |- | ||
− | | [[GBrowse]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] | + | | Day 4, AM || [[GBrowse]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] |
|- | |- | ||
− | | [[GBrowse syn]] || [[User:Mckays|Sheldon McKay]] || [http://iplantcollaborative.org iPlant Collaborative], [http://www.cshl.edu CSHL]<br>[[GBrowse_syn]], [[GBrowse]] | + | | Day 4, PM || [[GBrowse syn Tutorial 2013|GBrowse syn Tutorial]] || [[User:Mckays|Sheldon McKay]] || [http://iplantcollaborative.org iPlant Collaborative], [http://www.cshl.edu CSHL]<br>[[GBrowse_syn]], [[GBrowse]] |
|- | |- | ||
− | | [[GFF3]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] | + | | Day 1, AM || [[GFF3]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] |
|- | |- | ||
− | | [[JBrowse]] || [[User:RBuels|Robert Buels]] || [http://berkeley.edu University of California, Berkeley]<br>[[JBrowse]] | + | | Day 3, AM || [[JBrowse Tutorial 2013|JBrowse Tutorial]] || [[User:RBuels|Robert Buels]] || [http://berkeley.edu University of California, Berkeley]<br>[[JBrowse]] |
|- | |- | ||
− | | [[MAKER]] || | + | | Day 1, PM || [[MAKER Tutorial 2013|MAKER Tutorial]] || Michael Campbell and Daniel Ence || [http://utah.edu University of Utah]<br>[[MAKER]] |
|- | |- | ||
− | | [[SOBA]] || | + | | Day 1, AM/PM || [[SOBA Tutorial]] || Michael Campbell and Daniel Ence || [http://www.utah.edu University of Utah]<br>[[MAKER]] |
|- | |- | ||
− | | [[Tripal]] || [[User:sficklin|Stephen Ficklin]] || [http://www.wsu.edu Washington State University]<br>[[Tripal]] | + | | Day 2, PM || [[Tripal Tutorial v1.1|Tripal Tutorial]] || [[User:sficklin|Stephen Ficklin]] || [http://www.wsu.edu Washington State University]<br>[[Tripal]] |
|- | |- | ||
− | | [[WebApollo]] || [[User: | + | | Day 3, PM || [[WebApollo Tutorial 2013|WebApollo Tutorial]] || [[User:Childers|Chris Childers]] || [http://genomes.missouri.edu/ University of Missouri]<br>[[Apollo]], [[WebApollo]] |
|} | |} | ||
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==Course Work== | ==Course Work== | ||
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The 2013 Summer School will use Amazon Web Services to host virtual GMOD instances containing the software and demo data used during the course. See [[Cloud|GMOD in the Cloud]] for more information on the GMOD Amazon Machine Images available to the public. The tutorials used on the course will be available on this wiki for interested persons to work through. | The 2013 Summer School will use Amazon Web Services to host virtual GMOD instances containing the software and demo data used during the course. See [[Cloud|GMOD in the Cloud]] for more information on the GMOD Amazon Machine Images available to the public. The tutorials used on the course will be available on this wiki for interested persons to work through. | ||
− | + | ==Sponsors== | |
+ | |||
+ | [[File:NESCentLogo152.jpg|100px|right|link=http://nescent.org|NESCent]] | ||
+ | GMOD thanks the [http://nescent.org National Evolutionary Synthesis Center (NESCent)] for its continued support of the GMOD project and for providing the venue for this course. NESCent is interested in outreach to groups who are underrepresented in evolutionary biology and improving evolution education, and offers resources for scientists, educators, and the general public that meet these goals. | ||
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+ | GMOD thanks the generous grant from the Amazon [http://aws.amazon.com/grants/ AWS in Education program], which provided free compute time on Amazon Web Services for the course tutors and participants. | ||
[[Category:GMOD Schools]] | [[Category:GMOD Schools]] | ||
[[Category:Tutorials]] | [[Category:Tutorials]] | ||
[[Category:Education and Outreach]] | [[Category:Education and Outreach]] | ||
+ | [[Category:2013 Summer School]] |
Latest revision as of 21:52, 22 January 2014
Dates: Friday July 19th - Tuesday July 23rd 2013
Venue: NESCent, North Carolina
GMOD 2013 Summer School wiki (contents available to course participants only)
The Course
The summer school comprises five days of hands-on courses on GMOD component installation, configuration, and usage. Most sessions are four hours (a half day), and the evenings feature work sessions where the instructors are available to answer questions and help participants use the tools with their data. The instructors on the course are experienced component developers and GMOD project staff.
The course covers the following topics in detail:
Course Work
The 2013 Summer School will use Amazon Web Services to host virtual GMOD instances containing the software and demo data used during the course. See GMOD in the Cloud for more information on the GMOD Amazon Machine Images available to the public. The tutorials used on the course will be available on this wiki for interested persons to work through.
Sponsors
GMOD thanks the National Evolutionary Synthesis Center (NESCent) for its continued support of the GMOD project and for providing the venue for this course. NESCent is interested in outreach to groups who are underrepresented in evolutionary biology and improving evolution education, and offers resources for scientists, educators, and the general public that meet these goals.
GMOD thanks the generous grant from the Amazon AWS in Education program, which provided free compute time on Amazon Web Services for the course tutors and participants.