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Difference between revisions of "Main Page"
From GMOD
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| − | + | * GMOD Core (Chado database and tools)<br /> | |
| + | *; [[gmod-core]] | ||
| + | *: the schema and tools to install it. [[[/chado_from_cvs From cvs]]]<br /> | ||
| + | *; [[XORT]] | ||
| + | *: a tool for loading and dumping chado-xml [[[http://sourceforge.net/project/showfiles.php?group_id=27707&package_id=148718 Download]]]<br /> | ||
| + | *; [[/gmodtools GMODTools]] | ||
| + | *: a collection of tools for extracting data from a chado database and formatting it in common bulk download formats (GFF, Fasta, etc) [[[/chado_from_cvs Included in schema cvs]]]<br /> | ||
| + | * MOD website<br /> | ||
| + | *; [http://turnkey.sf.net gmod-web/Turnkey] | ||
| + | *: a generic web front end for browsing database contents.<br /> | ||
| + | * Genome Editing and Visualization<br /> | ||
| + | *; [[Apollo]] | ||
| + | *: a Java application for viewing and editing genome annotations [[[http://www.fruitfly.org/annot/apollo/install.html Download]]]<br /> | ||
| + | *; [[GBrowse]] | ||
| + | *: a CGI application for displaying genome annotations [[[http://sourceforge.net/project/showfiles.php?group_id=27707&package_id=34513 Download]]]<br /> | ||
| + | * Comparative Genomics<br /> | ||
| + | *; [[Synbrowse]] | ||
| + | *: a GBrowse based synteny viewer [[[http://www.synbrowse.org/download.html Download]]]<br /> | ||
| + | *; [[CMap]] | ||
| + | *: a CGI application for displaying comparative maps [[[http://sourceforge.net/project/showfiles.php?group_id=27707&package_id=55129 Download]]]<br /> | ||
| + | * Literature curation<br /> | ||
| + | *; [[PubSearch]] | ||
| + | *: a Java servlet web application for annotating genes from literature [[[http://sourceforge.net/project/showfiles.php?group_id=27707&package_id=100560 Download]]]<br /> | ||
| + | *; [[PubFetch]] | ||
| + | *: a tool to facilitate literature collection for curators' use [[[http://sourceforge.net/project/showfiles.php?group_id=27707&package_id=126656 Download]]]<br /> | ||
| + | *; [[Textpresso]] | ||
| + | *: a text mining system for scientific literature [[[http://textpresso.org/textpresso/downloads.html Download]]]<br /> | ||
| + | * Database querying tools<br /> | ||
| + | *; [http://www.biomart.org/ BioMart] | ||
| + | *: a query-oriented data management system [[[http://www.biomart.org/install.html Download]]] | ||
Revision as of 18:13, 25 January 2007
- GMOD Core (Chado database and tools)
- gmod-core
- the schema and tools to install it. [[[/chado_from_cvs From cvs]]]
- XORT
- a tool for loading and dumping chado-xml [[Download]]
- /gmodtools GMODTools
- a collection of tools for extracting data from a chado database and formatting it in common bulk download formats (GFF, Fasta, etc) [[[/chado_from_cvs Included in schema cvs]]]
- MOD website
- gmod-web/Turnkey
- a generic web front end for browsing database contents.
- Genome Editing and Visualization
- Comparative Genomics
- Literature curation
- Database querying tools
